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NECEvent2014_3_4_scaffold_417

Alias: 173_002_scaffold_417

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_4_scaffold_417_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..600)
DNA (600bp) protein (200aa)
mur; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tri
UDP-N-acetylmuramyl-tripeptide synthetase n=2 Tax=Bifidobacterium dentium RepID=D2Q5A3_BIFDB
NECEvent2014_3_4_scaffold_417_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

748..1359
DNA (612bp) protein (204aa)
SigH RNA polymerase ECF-type sigma factor n=4 Tax=Bifidobacterium dentium RepID=D2Q5A2_BIFDB rbh
Sigma-70 region 2 {ECO:0000313|EMBL:EFM41904.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
sigH; sigH RNA polymerase ECF-type sigma factor
NECEvent2014_3_4_scaffold_417_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1356..1601
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S7L4_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB10116.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain
NECEvent2014_3_4_scaffold_417_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1826..2779)
DNA (954bp) protein (318aa)
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=4 Tax=Bifidobacterium dentium RepID=D2Q5A0_BIFDB rbh
Aldose 1-epimerase {ECO:0000313|EMBL:ETO96858.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_4_scaffold_417_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3026..4045
DNA (1020bp) protein (340aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
ispH; ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Bifidobacterium dentium RepID=D2Q599_BIFDB rbh
NECEvent2014_3_4_scaffold_417_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4060..4566)
DNA (507bp) protein (169aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriace
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Bifidobacterium dentium RepID=E0Q5I4_9BIFI rbh
hypothetical protein
NECEvent2014_3_4_scaffold_417_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4791..5846)
DNA (1056bp) protein (352aa)
gap; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
Gap Glyceraldehyde 3-phosphate dehydrogenase {ECO:0000313|EMBL:ADB10112.1}; EC=1.2.1.12 {ECO:0000313|EMBL:ADB10112.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteri
Gap Glyceraldehyde 3-phosphate dehydrogenase n=4 Tax=Bifidobacterium dentium RepID=D2Q597_BIFDB rbh
NECEvent2014_3_4_scaffold_417_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6008..6754)
DNA (747bp) protein (249aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EFM41910.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EFM41910.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacteriu
thiamin pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=2 Tax=Bifidobacterium dentium RepID=E1N9E7_9BIFI rbh
NECEvent2014_3_4_scaffold_417_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6913..8799
DNA (1887bp) protein (629aa)
Asparagine synthetase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7M0_9BIFI rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27431.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
asnH; asparagine synthetase
NECEvent2014_3_4_scaffold_417_10
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9055..9753
DNA (699bp) protein (233aa)
Translation initiation factor IF-3 n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7M1_9BIFI rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
translation initiation factor IF-3
NECEvent2014_3_4_scaffold_417_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


9772..9966
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=4 Tax=Bifidobacterium dentium RepID=D2Q593_BIFDB
rpmI; 50S ribosomal protein
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" so
NECEvent2014_3_4_scaffold_417_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


10019..10402
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=4 Tax=Bifidobacterium dentium RepID=D2Q592_BIFDB
rplT; 50S ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" s
NECEvent2014_3_4_scaffold_417_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10510..11466
DNA (957bp) protein (319aa)
Tyrosine recombinase XerD n=2 Tax=Bifidobacterium dentium RepID=D2Q591_BIFDB rbh
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE
integrase/recombinase rbh
NECEvent2014_3_4_scaffold_417_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11562..12401
DNA (840bp) protein (280aa)
ParA1 Chromosome partitioning protein parA n=4 Tax=Bifidobacterium dentium RepID=D2Q590_BIFDB rbh
parA1; chromosome partitioning protein ParA rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27426.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_4_scaffold_417_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12531..13328
DNA (798bp) protein (266aa)
phosphohydrolase (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Bifidobacterium dentium RepID=E0Q5J3_9BIFI rbh
NUDIX domain protein {ECO:0000313|EMBL:ETO96867.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_4_scaffold_417_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13371..14726
DNA (1356bp) protein (452aa)
Transporter, MFS superfamily n=4 Tax=Bifidobacterium dentium RepID=D2Q588_BIFDB rbh
Transporter, major facilitator family protein {ECO:0000313|EMBL:ETO96872.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidoba
MFS superfamily transporter
Displaying 16 items

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