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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_1
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(93..1031)
DNA (939bp) protein (313aa)
carbamate kinase (EC:2.7.2.2)
UPI0003D61205 related cluster n=1 Tax=unknown RepID=UPI0003D61205 rbh
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1476857 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B-jedd.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_2
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1266..2519)
DNA (1254bp) protein (418aa)
Proton/glutamate symporter family protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZDF8_9CLOT rbh
Proton/glutamate symporter family protein {ECO:0000313|EMBL:CCQ95948.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultu rbh
proton/glutamate symporter family protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_3
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2651..4081)
DNA (1431bp) protein (477aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- rbh
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Clostridium ultunense Esp RepID=M1ZKS2_9CLOT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_4
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4071..5534)
DNA (1464bp) protein (488aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=128897 rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Clostridium ultunense Esp RepID=M1ZBT4_9CLOT rbh
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5549..5836)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AT38_9CLOT
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_6
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5942..7924)
DNA (1983bp) protein (661aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1288971 species="Bacteri rbh
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Clostridium ultunense Esp RepID=M1ZCR3_9CLOT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_7
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7929..10130)
DNA (2202bp) protein (734aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc rbh
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.4.12)
ATP-dependent DNA helicase n=1 Tax=Clostridium ultunense Esp RepID=M1ZDF4_9CLOT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_8
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10283..11083)
DNA (801bp) protein (267aa)
Integrase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QYI9_9CLOT rbh
Integrase {ECO:0000313|EMBL:EPR08365.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;" rbh
integrase catalytic subunit
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_9
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11125..11691)
DNA (567bp) protein (189aa)
Transposase IS3/IS911 family protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ87_CLOSW
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ADL04338.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strai
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_10
unknown

Not on your lists

comp(11796..11930)
DNA (135bp) protein (45aa)

This feature has no annotations

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_11
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12205..13200
DNA (996bp) protein (332aa)
AIR synthase related protein domain protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZCR8_9CLOT rbh
AIR synthase related protein domain protein {ECO:0000313|EMBL:CCQ95949.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ul rbh
hypE; hydrogenase maturation factor HypE
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_12
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13313..15394
DNA (2082bp) protein (694aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1YZD6_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ95950.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_13
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15446..15967
DNA (522bp) protein (174aa)
UPF0316 protein Clos_0555 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=Y555_ALKOO
Uncharacterized protein {ECO:0000313|EMBL:AKB77720.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina h
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_14
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16037..17026
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZDG2_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ95953.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;" rbh
gerM; spore germination protein GerM
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_15
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17193..17804
DNA (612bp) protein (204aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CSX1_9CLOT
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_16
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17806..18285
DNA (480bp) protein (160aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
Phosphodiesterase family protein n=1 Tax=Clostridium ultunense Esp RepID=M1YZE0_9CLOT
yfcE1; phosphodiesterase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_17
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19360..19899
DNA (540bp) protein (180aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=29354 species="Ba
dCTP deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=2 Tax=Clostridium thermocellum RepID=DCD_CLOTH
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_18
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20170..20595
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BTA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR20242.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_19
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20637..20867
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SV06_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL52981.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain A
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_20
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

21227..22879
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0002D3CB45 rbh
II-like Na/Pi co-transporter Tax=RBG_13_WOR_2_41_10_curated
Na/Pi-cotransporter II-like protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_21
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22929..24287)
DNA (1359bp) protein (453aa)
Nucleoside recognition domain protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZL4_9CLOT rbh
Nucleoside recognition domain protein {ECO:0000313|EMBL:CDD55867.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" sourc rbh
nucleoside recognition domain-containing protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_22
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24314..25216)
DNA (903bp) protein (301aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Al
Arginase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKX3_ALKOO
arginase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_23
Planococcus sp. PAMC 21323, Planococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25267..26283)
DNA (1017bp) protein (339aa)
Dehydrogenase n=1 Tax=Planococcus antarcticus DSM 14505 RepID=I4X5Q5_9BACL
dehydrogenase
Dehydrogenase {ECO:0000313|EMBL:AIY06657.1}; TaxID=1526927 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus.;" source="Planococcus sp. PAMC 21323.;"
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_24
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26295..27455)
DNA (1161bp) protein (387aa)
Predicted aminotransferase n=2 Tax=Clostridium RepID=D8GPA9_CLOLD rbh
aminotransferase
Aminotransferase {ECO:0000313|EMBL:AKA69481.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_25
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27637..28404
DNA (768bp) protein (256aa)
Transcriptional regulator, IclR family n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RRF4_9CLOT
transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AGY75157.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoeth
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_26
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28517..29476
DNA (960bp) protein (320aa)
ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z {ECO:0000255|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000255|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000255|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000255|HAMAP-Rule:MF_0181 rbh
Ribonuclease Z n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RNZ_ALKOO rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_27
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29554..30399
DNA (846bp) protein (282aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:000 rbh
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Clostridium ultunense Esp RepID=M1ZMA2_9CLOT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_28
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30419..31666
DNA (1248bp) protein (416aa)
Sodium:dicarboxylate symporter n=1 Tax=Clostridium ultunense Esp RepID=M1ZI25_9CLOT rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:CCQ98596.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.; rbh
sodium:dicarboxylate symporter
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_29
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31929..33134
DNA (1206bp) protein (402aa)
Sodium/hydrogen exchanger n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIJ5_ALKOO rbh
Sodium/hydrogen exchanger family protein {ECO:0000313|EMBL:KIE47948.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argen rbh
sodium/hydrogen exchanger
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_2_30
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33157..33498
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIJ6_ALKOO
Uncharacterized protein {ECO:0000313|EMBL:KIE47930.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.
hypothetical protein
Displaying items 1-30 of 124 in total

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