ggKbase home page

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_1
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(282..1013)
DNA (732bp) protein (244aa)
Glutamine ABC transporter ATP-binding protein GlnQ n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZM5_CLOA9 rbh
glnQ; glutamine ABC transporter ATP-binding protein GlnQ
Glutamine ABC transporter ATP-binding protein GlnQ {ECO:0000313|EMBL:AFS77816.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_2
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1091..1813)
DNA (723bp) protein (241aa)
UPI0003D65985 related cluster n=1 Tax=unknown RepID=UPI0003D65985 rbh
Amino acid ABC transporter, glutamine-binding protein/permease protein {ECO:0000313|EMBL:KJR45667.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfospo rbh
glnP; amino ABC transporter, permease , 3-TM region,His/Glu/Gln/Arg/opine family domain protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_3
Bacillus vireti, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1824..2663)
DNA (840bp) protein (280aa)
UPI0003D65C62 related cluster n=1 Tax=unknown RepID=UPI0003D65C62 rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:ETI68288.1}; TaxID=1131730 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus vireti LMG 21834.;" rbh
extracellular solute-binding protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_4
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3338..4261)
DNA (924bp) protein (308aa)
Glutamate formiminotransferase @ Glutamate formyltransferase {ECO:0000313|EMBL:CCQ95124.1}; EC=2.1.2.5 {ECO:0000313|EMBL:CCQ95124.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostrid
ftcD; bifunctional glutamate formiminotransferase/formimidoyltetrahydrofolate cyclodeaminase FtcD (EC:2.1.2.5 4.3.1.4)
Glutamate formiminotransferase @ Glutamate formyltransferase n=1 Tax=Clostridium ultunense Esp RepID=M1ZB11_9CLOT
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_5
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4300..4941)
DNA (642bp) protein (214aa)
Formiminotransferase-cyclodeaminase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TWU2_ALKMQ
formiminotransferase-cyclodeaminase
Formiminotransferase-cyclodeaminase {ECO:0000313|EMBL:ABR50660.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metallire
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_6
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5389..6819)
DNA (1431bp) protein (477aa)
Putative sigma54 specific transcriptional regulator n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QS50_ACEAZ
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:KDR94428.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
sigma-54 specific transcriptional regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7097..8803)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4L0F4_OSCVS rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK98982.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (st rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_8
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8869..9090)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KE21_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK97865.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_9
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9177..11837)
DNA (2661bp) protein (887aa)
Predicted permease n=1 Tax=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) RepID=Q97FK6_CLOAB
permease
Predicted permease {ECO:0000313|EMBL:AAK80677.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_10
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11834..12517)
DNA (684bp) protein (228aa)
ABC transporter family protein n=2 Tax=Clostridium difficile RepID=T2YT06_CLODI
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ50009.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp
ABC transporter ATP-binding protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12576..13775)
DNA (1200bp) protein (400aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
two-component sensor histidine kinase n=1 Tax=Clostridium sp. JC122 RepID=UPI000289DE2E
Two-component sensor histidine kinase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_12
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13762..14448)
DNA (687bp) protein (229aa)
Transcriptional regulatory family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DHX1_CLODI
Regulator {ECO:0000313|EMBL:KGJ50010.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
two-component response regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_13
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14668..15102
DNA (435bp) protein (145aa)
GCN5-related N-acetyltransferase n=1 Tax=Paenibacillus alvei A6-6i-x RepID=S9UP64_PAEAL
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EPY12095.1}; TaxID=1117109 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei A6-6i-x
spermidine acetyltransferase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_14
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15274..16899)
DNA (1626bp) protein (542aa)
Methionine--tRNA ligase 1 {ECO:0000255|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000255|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase 1 {ECO:0000255|HAMAP-Rule:MF_00098}; Short=MetRS 1 {ECO:0000255|H rbh
Methionine--tRNA ligase 1 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=SYM1_ALKOO rbh
methionyl-tRNA synthetase rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_15
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17329..19455)
DNA (2127bp) protein (709aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEK3_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW18332.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus or
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19591..19794)
DNA (204bp) protein (68aa)
DNA-binding protein n=13 Tax=Clostridium difficile RepID=C9XJ67_CLODC
DNA-binding protein
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL22472.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_17
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19979..21343)
DNA (1365bp) protein (455aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y5Z5_9FIRM rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ90934.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus yo rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_18
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21330..21821)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y5Z6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:GAE90499.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolve
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_19
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22094..22690)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PST6_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH21940.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22953..23771)
DNA (819bp) protein (273aa)
Transcriptional regulator, effector binding domain protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7SZY6_CLOSG rbh
Clostridium botulinum B2 450 B2_450_contig007, whole genome shotgun sequence {ECO:0000313|EMBL:KIS24161.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos rbh
MerR family transcriptional regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_21
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23921..24556)
DNA (636bp) protein (212aa)
thiE1; thiamine-phosphate synthase ThiE (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5
Thiamine-phosphate synthase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LP51_9CLOT
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_22
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24540..25364)
DNA (825bp) protein (275aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethy rbh
Hydroxyethylthiazole kinase n=1 Tax=Clostridium sp. BNL1100 RepID=H2JEE5_9CLOT rbh
hydroxyethylthiazole kinase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_23
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25348..26559)
DNA (1212bp) protein (404aa)
Putative permease n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KTN6_OSCVS rbh
putative permease
Putative permease {ECO:0000313|EMBL:BAL00291.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain D rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_7_24
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26559..27380)
DNA (822bp) protein (274aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1X1R4_ANEAE rbh
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:KAJ53593.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum D rbh
Displaying 24 items

View Taxonomy