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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_1
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..385
DNA (384bp) protein (128aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium sp. DL-VIII RepID=G7M507_9CLOT
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHI99456.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
methyl-accepting chemotaxis protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_2
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(473..1231)
DNA (759bp) protein (253aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TT58_ALKMQ rbh
4Fe-4S ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABR49376.1}; Flags: Precursor;; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphi rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_3
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1342..1791)
DNA (450bp) protein (150aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400
methionine-R-sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Clostridium ultunense Esp RepID=M1Z9W6_9CLOT
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_4
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2380..3183
DNA (804bp) protein (268aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I884_9CLOT rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETA82078.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youn rbh
amino acid ABC transporter
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3195..3836
DNA (642bp) protein (214aa)
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family n=2 Tax=Clostridium perfringens RepID=B1BY24_CLOPF
His/Glu/Gln/Arg/opine ABC transporter permease
Probable amino acid ABC transporter {ECO:0000313|EMBL:BAB81031.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_6
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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3845..4456
DNA (612bp) protein (204aa)
ABC transporter, ATP-binding protein n=2 Tax=Lactobacillus fermentum RepID=C0WWY7_LACFE
ABC superfamily ATP binding cassette transporter, ABC protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEI22387.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus ferme
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4538..4957
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Clostridiaceae bacterium JC13 RepID=UPI0003043FC2
Uncharacterized protein {ECO:0000313|EMBL:EEH97207.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
PadR family transcriptional regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_8
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4989..6308
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NIB3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK28888.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein DUF2812
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_9
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6537..8525)
DNA (1989bp) protein (663aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CFH8_9CLOT
Chemotaxis protein {ECO:0000313|EMBL:KGK87387.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
methyl-accepting chemotaxis sensory transducer
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_10
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8967..10904
DNA (1938bp) protein (646aa)
Fumarate reductase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I4R6_9CLOT
Fumarate reductase {ECO:0000313|EMBL:ETA80174.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
flavocytochrome c
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_11
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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10988..11563
DNA (576bp) protein (192aa)
Transcription regulator (TetR/AcrR family) n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A3Q9_CLOBO
transcriptional regulator Tax=RBG_13_Chloroflexi_48_10_curated
transcriptional regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_12
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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11738..12673
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D5D3_9FIRM
hypothetical protein
Tax=BJP_08E140C01_Clostridiales_46_19
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_13
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12699..12980
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:ABW19856.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain Oh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_14
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

13066..14877
DNA (1812bp) protein (604aa)
Oligoendopeptidase F n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T6D7_THEIA rbh
oligoendopeptidase F
Oligoendopeptidase F {ECO:0000313|EMBL:ADD03531.1}; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerob rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_15
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15109..16731
DNA (1623bp) protein (541aa)
transcriptional regulator CdaR n=1 Tax=Bacillus sp. 10403023 RepID=UPI0002887CC4 rbh
Transcriptional regulator, CdaR {ECO:0000313|EMBL:EET85322.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans rbh
transcriptional regulator CdaR
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_16
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16821..18173
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DIV4_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CCX75851.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:10 rbh
putative hydrolase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_17
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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18204..19331
DNA (1128bp) protein (376aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:CCU78683.1}; EC=3.5.1.16 {ECO:0000313|EMBL:CCU78683.1};; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halan rbh
peptidase M20 n=1 Tax=Bacillus sp. 10403023 RepID=UPI000287ED6B rbh
peptidase M20
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_18
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19346..20548
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Bacillus sp. 10403023 RepID=UPI00028920CC rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU78684.1}; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium saccharolyticu rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_19
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20655..22337
DNA (1683bp) protein (561aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s rbh
Sensor protein LytS n=1 Tax=Clostridium ultunense Esp RepID=M1ZLV0_9CLOT rbh
signal transduction histidine kinase LytS
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_20
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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22351..23118
DNA (768bp) protein (256aa)
Putative Sensory transduction protein LytT n=1 Tax=Clostridium ultunense Esp RepID=M1ZGC4_9CLOT
Sensory transduction protein LytT {ECO:0000313|EMBL:KGG79425.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter
response regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_21
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23246..24661
DNA (1416bp) protein (472aa)
Carbon starvation protein A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AS53_9CLOT
Carbon starvation protein A {ECO:0000313|EMBL:EOC99471.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiriti
cstA; carbon starvation protein CstA
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_22
unknown

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comp(24577..24750)
DNA (174bp) protein (58aa)

This feature has no annotations

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_8_23
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24806..26224
DNA (1419bp) protein (473aa)
Carbon starvation protein A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AS53_9CLOT rbh
Carbon starvation protein A {ECO:0000313|EMBL:EOC99471.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiriti rbh
cstA; carbon starvation protein CstA
Displaying 23 items

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