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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_1
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135..1040)
DNA (906bp) protein (302aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VVY0_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KGJ50808.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
Transcriptional regulator
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_2
Leptotrichia buccalis, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(4141..4419)
DNA (279bp) protein (93aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=523794 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiacea
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249) RepID=C7N970_LEPBD
CRISPR-associated protein Cas2
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_3
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4426..5418)
DNA (993bp) protein (331aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiace rbh
CRISPR-associated endonuclease Cas1 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AV01_CLOA9 rbh
cas1; CRISPR-associated endonuclease Cas1
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_4
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5430..5921)
DNA (492bp) protein (164aa)
CRISPR-associated protein Cas4 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY51_CLOA9
CRISPR-associated exonuclease Cas4 {ECO:0000313|EMBL:KJF26768.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
cas4; CRISPR-associated protein Cas4
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_5
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5938..8193)
DNA (2256bp) protein (752aa)
Metal dependent phosphohydrolase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQ84_ALKMQ rbh
CRISPR-associated protein Cas3 {ECO:0000313|EMBL:KJF26767.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;" rbh
metal dependent phosphohydrolase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_6
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8213..8983)
DNA (771bp) protein (257aa)
CRISPR-associated protein Cas5 family n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQ83_ALKMQ rbh
CRISPR-associated Cas5 family protein
CRISPR-associated protein Cas5 family {ECO:0000313|EMBL:ABR48351.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalli rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_7
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8970..9851)
DNA (882bp) protein (294aa)
CRISPR-associated regulatory protein Cst2 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWT1_CLOA9 rbh
cst2; CRISPR-associated regulatory protein Cst2
CRISPR-associated regulatory protein Cst2 {ECO:0000313|EMBL:AFS77694.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain A rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_8
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9844..11532)
DNA (1689bp) protein (563aa)
CRISPR-associated CXXC_CXXC protein Cst1 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AUZ5_CLOA9 rbh
cst1; CRISPR-associated CXXC_CXXC protein Cst1
CRISPR-associated CXXC_CXXC protein Cst1 {ECO:0000313|EMBL:AFS77693.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain AT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_9
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11544..12269)
DNA (726bp) protein (242aa)
CRISPR-associated endoribonuclease Cas6 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY46_CLOA9 rbh
cas6; CRISPR-associated endoribonuclease Cas6
CRISPR-associated endoribonuclease Cas6 {ECO:0000313|EMBL:AFS77692.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATC rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_10
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12709..13689)
DNA (981bp) protein (327aa)
Helix-turn-helix type 11 domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZ85_CLOA9 rbh
helix-turn-helix domain-containing protein
Helix-turn-helix type 11 domain-containing protein {ECO:0000313|EMBL:AFS77691.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_11
unknown

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comp(13665..13802)
DNA (138bp) protein (46aa)

This feature has no annotations

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_12
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13837..15213)
DNA (1377bp) protein (459aa)
tpl; Tyrosine phenol-lyase (EC:4.1.99.2)
Tyrosine phenol-lyase {ECO:0000256|HAMAP-Rule:MF_00543, ECO:0000313|EMBL:CCP26844.1}; EC=4.1.99.2 {ECO:0000256|HAMAP-Rule:MF_00543, ECO:0000313|EMBL:CCP26844.1};; Beta-tyrosinase {ECO:0000256|HAMAP-Ru rbh
Tyrosine phenol-lyase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LQK2_TEPAE rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_13
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15387..16949)
DNA (1563bp) protein (521aa)
PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LQK3_TEPAE rbh
PAS modulated sigma54 specific transcriptional regulator, Fis family
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:CDI40874.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobactera rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_14
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17041..18198)
DNA (1158bp) protein (386aa)
trpB; tryptophan synthase, beta subunit (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:CBH22099.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; C rbh
Tryptophan synthase beta chain n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PT95_CLOSD rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_15
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18563..19954)
DNA (1392bp) protein (464aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostrid rbh
Dihydrolipoyl dehydrogenase n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EY73_CLOSG rbh
dihydrolipoamide dehydrogenase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_16
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19965..21266)
DNA (1302bp) protein (434aa)
TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Clostridium arbusti RepID=UPI000289AF07 rbh
dihydrolipoamide acetyltransferase
Dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:AKA69387.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.; rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_17
Clostridium magnum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21290..22285)
DNA (996bp) protein (332aa)
AcoR protein n=1 Tax=Clostridium magnum RepID=Q46144_9CLOT rbh
AcoR protein {ECO:0000313|EMBL:AAA21746.1}; TaxID=33954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium magnum.;" rbh
acoX; acetoin catabolism protein X
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_18
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22307..23278)
DNA (972bp) protein (324aa)
acoB; TPP-dependent acetoin dehydrogenase complex, E1 component subunit beta (EC:1.1.1.-)
TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EY71_CLOSG rbh
Acetoin dehydrogenase {ECO:0000313|EMBL:KJF28614.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23279..24259)
DNA (981bp) protein (327aa)
acoA; TPP-dependent acetoin dehydrogenase complex, E1 component subunit alpha (EC:1.1.1.-)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo rbh
TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit n=3 Tax=Clostridium botulinum RepID=C3KW35_CLOB6 rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_20
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24277..24600)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7HYQ2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA69391.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_21
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24807..26744)
DNA (1938bp) protein (646aa)
GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZX7_THEOJ rbh
GAF modulated Fis family sigma-54 specific transcriptional regulator
GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADL08754.1}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteral rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_22
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27335..27508
DNA (174bp) protein (58aa)
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Clostridium ultunense Esp RepID=M1ZI41_9CLOT
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:CCQ93597.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ul
short chain dehydrogenase family protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_23
unknown

Not on your lists

comp(27797..28327)
DNA (531bp) protein (177aa)

This feature has no annotations

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_54_24
Peptoniphilus sp. 1-1, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28396..28857)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D644_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ74974.1}; TaxID=875453 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. 1-1.;"
Displaying 24 items

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