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NECEvent2014_3_6_scaffold_110_12

Organism: NECEvent2014_3_6_Pseudomonas_aeruginosa_65_49

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 15 / 38 MC: 2
Location: 12835..13341

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=7 Tax=Pseudomonas aeruginosa RepID=K1D7C1_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 168.0
  • Bit_score: 332
  • Evalue 1.80e-88
  • rbh
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 168.0
  • Bit_score: 332
  • Evalue 5.10e-89
RNA polymerase sigma factor {ECO:0000313|EMBL:ETD47240.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas a similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 168.0
  • Bit_score: 331
  • Evalue 7.40e-88

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 507
ATGGGCATGGATCAGACACGCAATCGCCTCGTCGGCCTGATGTTCCAGAACGACTATTCCTGGCTGAGCGGGCGCCTGCGGCGCTACCTCGGCTGCCCCCACAGCGCCGAGGACATCGCCTCGGAAACCTTCCTCAAGGTCCTCGCCCTGCCGGACCCGGCAAGCATCCGCGAGCCGCGCGCGCTGCTCACCACCATCGCCCGCCGGTTGATGTACGACGGCTGGCGGCGCCAGGACCTGGAACGCGCCTACCTGGACAGCCTGGCCGGGCTTCCGGAGGCCCTCGCGCCGTCCGCCGAGGAGCAGGCCCAGGTGGTGGAAACCCTGCTGCGCCTGGAGCGCATGCTCGCCGGGCTGTCGCCGAAGGCCCGCGCCGCCTTCATCCATAGCCAGATCGGCGGACTGACCTACGTGGAGATCGCCGGCTTGCTGGAGGTTTCCGTCAGCCGCATCCACCAGTACATGGTCGAGGGCTTCAAGCAGTGCTACCAGGTGCTTGCCGAATGA
PROTEIN sequence
Length: 169
MGMDQTRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQDLERAYLDSLAGLPEALAPSAEEQAQVVETLLRLERMLAGLSPKARAAFIHSQIGGLTYVEIAGLLEVSVSRIHQYMVEGFKQCYQVLAE*