ggKbase home page

NECEvent2014_4_1_scaffold_35

Alias: 174_001_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_1_scaffold_35_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

293..1585
DNA (1293bp) protein (431aa)
Uracil permease n=3 Tax=Clostridium butyricum RepID=B1R0P8_CLOBU rbh
Uracil permease {ECO:0000313|EMBL:KJZ84018.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
uracil transporter
NECEvent2014_4_1_scaffold_35_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1860..3206
DNA (1347bp) protein (449aa)
UPI0003D5CD5B related cluster n=1 Tax=unknown RepID=UPI0003D5CD5B rbh
Berberine family protein {ECO:0000313|EMBL:ETI87701.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
berberine and berberine like family protein
NECEvent2014_4_1_scaffold_35_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3599..4435
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YXY7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84025.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative short-chain dehydrogenase
NECEvent2014_4_1_scaffold_35_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4581..5318)
DNA (738bp) protein (246aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostr
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AHP0_CLOBU rbh
NECEvent2014_4_1_scaffold_35_5
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5682..6566
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A778_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ93305.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
RpiR family transcriptional regulator
NECEvent2014_4_1_scaffold_35_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6692..7264)
DNA (573bp) protein (191aa)
Transcriptional regulatory protein DegU n=2 Tax=Clostridium butyricum RepID=B1R0Q1_CLOBU rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KHD14124.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;
two component transcriptional regulator, LuxR family
NECEvent2014_4_1_scaffold_35_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7354..8547)
DNA (1194bp) protein (398aa)
UPI0003D5D381 related cluster n=1 Tax=unknown RepID=UPI0003D5D381 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84055.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
integral membrane sensor signal transduction histidine kinase
NECEvent2014_4_1_scaffold_35_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8717..10003
DNA (1287bp) protein (429aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Clostridium butyricum RepID=C4IBW6_CLOBU rbh
Hemolysin D {ECO:0000313|EMBL:KHD14126.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
RND family efflux transporter MFP subunit
NECEvent2014_4_1_scaffold_35_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10016..13117
DNA (3102bp) protein (1034aa)
Acriflavin resistance protein n=2 Tax=Clostridium butyricum RepID=M8J4Y3_CLOBU rbh
RND multidrug efflux transporter Acriflavin resistance protein {ECO:0000313|EMBL:KJZ84006.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
nolG3; nodulation protein NolG
NECEvent2014_4_1_scaffold_35_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13352..13990
DNA (639bp) protein (213aa)
UPI0003AA5D49 related cluster n=1 Tax=unknown RepID=UPI0003AA5D49 rbh
Nitroreductase family protein {ECO:0000313|EMBL:ETI87696.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1
nitroreductase
NECEvent2014_4_1_scaffold_35_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14032..14469)
DNA (438bp) protein (146aa)
MarR-family transcriptional regulator n=2 Tax=Clostridium butyricum RepID=M8K0K8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ32277.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
MarR family transcriptional regulator
NECEvent2014_4_1_scaffold_35_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14684..15832
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YXD6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ32276.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
copper amine oxidase family protein,putative cell wall binding protein
NECEvent2014_4_1_scaffold_35_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16382..17359
DNA (978bp) protein (326aa)
PTS system, mannose-specific IIB component/PTS system, mannose-specific IIA component {ECO:0000313|EMBL:KJZ84034.1}; EC=2.7.1.69 {ECO:0000313|EMBL:KJZ84034.1};; TaxID=1523154 species="Bacteria; Firmic
Pts system mannose-specific eiiab component n=4 Tax=Clostridium butyricum RepID=B1R0Q8_CLOBU rbh
PTS system sorbose subfamily transporter subunit IIB
NECEvent2014_4_1_scaffold_35_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17393..18199
DNA (807bp) protein (269aa)
PTS system sorbose-specific iic component n=2 Tax=Clostridium butyricum RepID=M8J4Y9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ32274.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
PTS system sorbose-specific transporter subunit IIC
NECEvent2014_4_1_scaffold_35_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18218..19129
DNA (912bp) protein (304aa)
IIDman n=4 Tax=Clostridium butyricum RepID=B1R0R0_CLOBU rbh
PTS system, mannose/fructose/sorbose family, IID component {ECO:0000313|EMBL:ENZ32273.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
PTS system mannose/fructose/sorbose family transporter subunit IID
NECEvent2014_4_1_scaffold_35_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19334..19708
DNA (375bp) protein (125aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R0R1_CLOBU
Putative regulator of the mannose operon, ManO {ECO:0000313|EMBL:KJZ84037.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
hypothetical protein
NECEvent2014_4_1_scaffold_35_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19985..21961
DNA (1977bp) protein (659aa)
Beta-lactamase {ECO:0000313|EMBL:KJZ84017.1}; EC=3.5.2.6 {ECO:0000313|EMBL:KJZ84017.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YXD4_CLOBU rbh
beta-lactamase
NECEvent2014_4_1_scaffold_35_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21980..22759
DNA (780bp) protein (260aa)
Two-component system response regulator n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YXY0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84032.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
regulatory protein VanR
NECEvent2014_4_1_scaffold_35_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22785..23843
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AHM7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84028.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
two-component sensor histidine kinase
NECEvent2014_4_1_scaffold_35_20
unknown

Not on your lists

23788..23931
DNA (144bp) protein (48aa)

This feature has no annotations

NECEvent2014_4_1_scaffold_35_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23911..24807)
DNA (897bp) protein (299aa)
UPI0003D5F3D9 related cluster n=1 Tax=unknown RepID=UPI0003D5F3D9 rbh
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:KJZ84052.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sour
protein of unknown function DUF6 transmembrane
NECEvent2014_4_1_scaffold_35_22
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24951..25847
DNA (897bp) protein (299aa)
Helix-turn-helix domain-containing protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EP89_CLOPA rbh
Helix-turn-helix, AraC type {ECO:0000313|EMBL:KJZ92122.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
helix-turn-helix domain-containing protein
NECEvent2014_4_1_scaffold_35_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25974..27311)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AJH7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ32267.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Histidine kinase, HAMP region:chemotaxis sensory transducer precursor
NECEvent2014_4_1_scaffold_35_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27560..27769
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9YXD0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ32266.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
FeoA family protein
NECEvent2014_4_1_scaffold_35_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27804..28025
DNA (222bp) protein (74aa)
Ferrous iron transport protein A n=3 Tax=Clostridium butyricum RepID=C4IBY1_CLOBU
Ferrous iron transport protein A {ECO:0000313|EMBL:KJZ84157.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.
hypothetical protein
NECEvent2014_4_1_scaffold_35_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28143..30293
DNA (2151bp) protein (717aa)
Ferrous iron transport protein B n=2 Tax=Clostridium butyricum RepID=M8J504_CLOBU rbh
Ferrous iron transporter B {ECO:0000313|EMBL:ENZ32264.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ferrous iron transport protein B
NECEvent2014_4_1_scaffold_35_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30538..30696
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8K0F4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ32263.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_4_1_scaffold_35_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31025..31942
DNA (918bp) protein (306aa)
Ribokinase n=2 Tax=Clostridium butyricum RepID=M8JDR0_CLOBU rbh
Ribokinase {ECO:0000313|EMBL:ENZ32262.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rbsK; ribokinase
NECEvent2014_4_1_scaffold_35_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31959..32354
DNA (396bp) protein (132aa)
D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011477}; EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00166232};; TaxID=1403941 species="Bacteria; Fir
D-ribose pyranase n=2 Tax=Clostridium butyricum RepID=M8JF31_CLOBU
D-ribose pyranase
NECEvent2014_4_1_scaffold_35_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32368..33876
DNA (1509bp) protein (503aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostri
Ribose import ATP-binding protein RbsA n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J4S2_CLOBU rbh
ABC transporter related protein
Displaying items 1-30 of 117 in total

View Taxonomy