ggKbase home page

NECEvent2014_4_1_scaffold_83

Alias: 174_001_scaffold_83

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_1_scaffold_83_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(689..2980)
DNA (2292bp) protein (764aa)
Protein-export membrane protein SecDF n=27 Tax=Staphylococcus epidermidis RepID=Q5HNR4_STAEQ rbh
Protein-export membrane protein SecDF {ECO:0000313|EMBL:AAW54586.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC
secD; export membrane protein SecD
NECEvent2014_4_1_scaffold_83_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3319..3579)
DNA (261bp) protein (87aa)
Preprotein translocase, YajC subunit n=70 Tax=Staphylococcus epidermidis RepID=Q5HNR3_STAEQ
Preprotein translocase subunit YajC {ECO:0000313|EMBL:ESV18879.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
Preprotein translocase subunit YajC (TC 3.A.5.1.1)
NECEvent2014_4_1_scaffold_83_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3595..4734)
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00168}; EC=2.4.2.29 {ECO:0000255|HAMAP-Rule:MF_00168};; Guanine insertion enzyme {ECO:0000255|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosy
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=46 Tax=Staphylococcus epidermidis RepID=TGT_STAEQ rbh
NECEvent2014_4_1_scaffold_83_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4755..5819)
DNA (1065bp) protein (355aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Staphylococcus epidermidis RepID=D4FIH6_STAEP rbh
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
NECEvent2014_4_1_scaffold_83_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5782..6786)
DNA (1005bp) protein (335aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00016};; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; St
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB n=46 Tax=Staphylococcus epidermidis RepID=RUVB_STAEQ rbh
NECEvent2014_4_1_scaffold_83_6
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6800..7402)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction ATP-dependent DNA helicase RuvA n=54 Tax=Staphylococcus epidermidis RepID=RUVA_STAEQ rbh
Holliday junction DNA helicase RuvA
NECEvent2014_4_1_scaffold_83_7
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7415..7879)
DNA (465bp) protein (155aa)
UPF0735 ACT domain-containing protein HMPREF0789_1329 n=3 Tax=Staphylococcus epidermidis RepID=C5Q9Q5_STAEP
UPF0735 ACT domain-containing protein Q614_SASC00199G0002 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
hypothetical protein
NECEvent2014_4_1_scaffold_83_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7882..9174)
DNA (1293bp) protein (431aa)
GTPase Obg n=42 Tax=Staphylococcus epidermidis RepID=OBG_STAES rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Stap
obgE; GTPase ObgE
NECEvent2014_4_1_scaffold_83_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(9320..9604)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=86 Tax=Staphylococcus RepID=RL27_STAEQ
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
LSU ribosomal protein L27p
NECEvent2014_4_1_scaffold_83_10
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9616..9936)
DNA (321bp) protein (107aa)
Uncharacterized protein n=78 Tax=Staphylococcus epidermidis RepID=Q5HNQ5_STAEQ
Uncharacterized protein {ECO:0000313|EMBL:ETJ14777.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Potential ribosomal protein
NECEvent2014_4_1_scaffold_83_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(9941..10249)
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=81 Tax=Staphylococcus epidermidis RepID=RL21_STAEQ
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus ep
rplU; 50S ribosomal protein L21
NECEvent2014_4_1_scaffold_83_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10371..10817)
DNA (447bp) protein (149aa)
Rod shape-determining protein MreD, putative n=50 Tax=Staphylococcus epidermidis RepID=Q5HNQ3_STAEQ
Rod shape-determining protein MreD {ECO:0000313|EMBL:EFE59887.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).
mreD; rod shape-determining protein MreD
NECEvent2014_4_1_scaffold_83_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10890..11729)
DNA (840bp) protein (280aa)
Cell shape-determining protein MreC n=32 Tax=Staphylococcus epidermidis RepID=C5Q9R1_STAEP rbh
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphyloc
rod shape-determining protein MreC
NECEvent2014_4_1_scaffold_83_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12136..12276)
DNA (141bp) protein (47aa)
Uncharacterized protein n=53 Tax=Staphylococcus epidermidis RepID=Q5HNQ1_STAEQ
Uncharacterized protein {ECO:0000313|EMBL:AAW54551.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
hypothetical protein
NECEvent2014_4_1_scaffold_83_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12360..12845)
DNA (486bp) protein (162aa)
Uncharacterized protein n=51 Tax=Staphylococcus epidermidis RepID=Q5HNQ0_STAEQ rbh
Uncharacterized protein {ECO:0000313|EMBL:EFE59884.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hypothetical protein
NECEvent2014_4_1_scaffold_83_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13010..13189
DNA (180bp) protein (60aa)
Uncharacterized protein n=50 Tax=Staphylococcus epidermidis RepID=Q5HNP9_STAEQ
Uncharacterized protein {ECO:0000313|EMBL:AAW54553.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
hypothetical protein
NECEvent2014_4_1_scaffold_83_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13253..13918)
DNA (666bp) protein (222aa)
UPF0758 protein SE_1336 n=44 Tax=Staphylococcus epidermidis RepID=Y1336_STAES rbh
UPF0758 protein SE_1336; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
DNA repair protein RadC
NECEvent2014_4_1_scaffold_83_18

Not on your lists

comp(13930..14640)
DNA (711bp) protein (237aa)
Type IV prepilin peptidase n=35 Tax=Staphylococcus epidermidis RepID=Q8CNZ3_STAES rbh
A24 family peptidase {ECO:0000313|EMBL:ETJ18379.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Late competence protein ComC, processing protease
NECEvent2014_4_1_scaffold_83_19

Not on your lists

comp(14824..16089)
DNA (1266bp) protein (422aa)
Folylpolyglutamate synthase/dihydrofolate synthase n=43 Tax=Staphylococcus epidermidis RepID=Q5HNP0_STAEQ rbh
Folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:ETJ18380.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
folC; bifunctional FolC family protein
NECEvent2014_4_1_scaffold_83_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(16100..18730)
DNA (2631bp) protein (877aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
Valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=38 Tax=Staphylococcus epidermidis RepID=SYV_STAEQ rbh
NECEvent2014_4_1_scaffold_83_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19034..19633
DNA (600bp) protein (200aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:EFE59878.1}; EC=3.2.2.20 {ECO:0000313|EMBL:EFE59878.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="
DNA-3-methyladenine glycosylase (EC:3.2.2.20)
Methyladenine glycosylase n=1 Tax=Staphylococcus epidermidis VCU123 RepID=H3VVV3_STAEP rbh
NECEvent2014_4_1_scaffold_83_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19800..20819)
DNA (1020bp) protein (340aa)
Membrane protein, putative n=40 Tax=Staphylococcus epidermidis RepID=Q5HNN7_STAEQ rbh
Putative membrane protein AbrB {ECO:0000313|EMBL:EFE59877.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hypothetical protein
NECEvent2014_4_1_scaffold_83_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21274..22560)
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde 2,1-aminomutase 1 {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA 1 {ECO:0000255|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000255|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde am
Glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase 1 n=42 Tax=Staphylococcus epidermidis RepID=GSA1_STAEQ rbh
NECEvent2014_4_1_scaffold_83_24

Not on your lists

comp(22581..23555)
DNA (975bp) protein (325aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=43 Tax=Staphylococcus epidermidis RepID=HEM2_STAEQ rbh
Delta-aminolevulinic acid dehydratase {ECO:0000313|EMBL:ETJ18385.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_4_1_scaffold_83_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23545..24225)
DNA (681bp) protein (227aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EFE59874.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EFE59874.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Stap
Uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=16 Tax=Staphylococcus epidermidis RepID=D4FIF5_STAEP rbh
NECEvent2014_4_1_scaffold_83_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24259..25185)
DNA (927bp) protein (309aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
Porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=49 Tax=Staphylococcus epidermidis RepID=HEM3_STAEQ rbh
NECEvent2014_4_1_scaffold_83_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25239..26051)
DNA (813bp) protein (271aa)
HemA concentration negative effector n=41 Tax=Staphylococcus epidermidis RepID=Q8CNY7_STAES rbh
Cytochrome c assembly protein {ECO:0000313|EMBL:EFE59872.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase
NECEvent2014_4_1_scaffold_83_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26073..27419)
DNA (1347bp) protein (449aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
Glutamyl-tRNA reductase n=16 Tax=Staphylococcus epidermidis RepID=D4FIF2_STAEP rbh
hemA; glutamyl-tRNA reductase
NECEvent2014_4_1_scaffold_83_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27589..28176)
DNA (588bp) protein (196aa)
Probable GTP-binding protein EngB n=48 Tax=Staphylococcus epidermidis RepID=ENGB_STAEQ rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphyloc
GTP-binding protein EngB
NECEvent2014_4_1_scaffold_83_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28288..29550)
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=54 Tax=Staphylococcus epidermidis RepID=CLPX_STAEQ rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX
Displaying items 1-30 of 65 in total

View Taxonomy