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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 51-100 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_300 174_001_scaffold_300
Species: Staphylococcus epidermidis (91.67%)
12 12815 bp 31.61 29.73 87.13
NECEvent2014_4_1_scaffold_303 174_001_scaffold_303
Species: Staphylococcus epidermidis (83.33%)
12 12752 bp 33.31 26.31 86.79
NECEvent2014_4_1_scaffold_304 174_001_scaffold_304
Species: Staphylococcus epidermidis (91.67%)
12 12370 bp 34.44 29.89 84.88
NECEvent2014_4_1_scaffold_332 174_001_scaffold_332
Species: Streptococcus pneumoniae (63.64%)
11 9739 bp 28.40 26.00 74.67
NECEvent2014_4_1_scaffold_339 174_001_scaffold_339
Species: Staphylococcus epidermidis (100%)
11 8632 bp 31.13 27.02 75.38
NECEvent2014_4_1_scaffold_336 174_001_scaffold_336
Species: Staphylococcus epidermidis (80%)
10 9033 bp 33.13 31.82 83.26
NECEvent2014_4_1_scaffold_343 174_001_scaffold_343
Species: Staphylococcus epidermidis (80%)
10 8593 bp 32.49 25.96 85.57
NECEvent2014_4_1_scaffold_382 174_001_scaffold_382
Species: Staphylococcus epidermidis (90%)
10 6807 bp 31.41 28.43 92.11
NECEvent2014_4_1_scaffold_400 174_001_scaffold_400
Genus: Staphylococcus (80%)
10 6185 bp 26.58 13.97 83.04
NECEvent2014_4_1_scaffold_434 174_001_scaffold_434
Genus: Staphylococcus (50%)
10 5249 bp 27.32 37.38 88.47
NECEvent2014_4_1_scaffold_438 174_001_scaffold_438
Species: Staphylococcus epidermidis (70%)
10 5184 bp 29.15 23.55 50.12
NECEvent2014_4_1_scaffold_322 174_001_scaffold_322
Species: Staphylococcus epidermidis (77.78%)
9 10786 bp 31.62 31.37 81.91
NECEvent2014_4_1_scaffold_324 174_001_scaffold_324
Genus: Staphylococcus (55.56%)
9 10471 bp 32.66 26.65 91.51
NECEvent2014_4_1_scaffold_329 174_001_scaffold_329
Species: Staphylococcus epidermidis (77.78%)
9 9964 bp 32.96 26.95 83.34
NECEvent2014_4_1_scaffold_335 174_001_scaffold_335
Species: Staphylococcus sp. DORA_6_22 (55.56%)
9 9290 bp 32.58 25.54 91.19
NECEvent2014_4_1_scaffold_338 174_001_scaffold_338
Species: Staphylococcus epidermidis (66.67%)
9 8645 bp 31.17 33.23 83.46
NECEvent2014_4_1_scaffold_346 174_001_scaffold_346
Species: Staphylococcus epidermidis (88.89%)
9 8559 bp 29.41 24.33 83.91
NECEvent2014_4_1_scaffold_348 174_001_scaffold_348
Species: Staphylococcus epidermidis (55.56%)
9 8517 bp 29.09 28.39 85.56
NECEvent2014_4_1_scaffold_352 174_001_scaffold_352
Genus: Staphylococcus (100%)
9 8203 bp 27.61 15.62 70.84
NECEvent2014_4_1_scaffold_373 174_001_scaffold_373
Species: Staphylococcus epidermidis (88.89%)
9 7467 bp 33.12 29.85 88.91
NECEvent2014_4_1_scaffold_379 174_001_scaffold_379
Species: Staphylococcus epidermidis (55.56%)
9 6935 bp 31.75 25.72 81.37
NECEvent2014_4_1_scaffold_424 174_001_scaffold_424
Species: Staphylococcus epidermidis (77.78%)
9 5591 bp 34.00 26.75 76.52
NECEvent2014_4_1_scaffold_447 174_001_scaffold_447
Species: Staphylococcus epidermidis (55.56%)
9 5065 bp 33.37 25.68 97.02
NECEvent2014_4_1_scaffold_287 174_001_scaffold_287
Species: Staphylococcus epidermidis (88.89%)
9 14056 bp 31.53 24.09 90.45
NECEvent2014_4_1_scaffold_334 174_001_scaffold_334
Species: Staphylococcus epidermidis (87.5%)
8 9379 bp 33.03 26.80 84.92
NECEvent2014_4_1_scaffold_354 174_001_scaffold_354
Species: Staphylococcus epidermidis (87.5%)
8 8040 bp 32.75 25.97 84.89
NECEvent2014_4_1_scaffold_356 174_001_scaffold_356
Species: Staphylococcus epidermidis (62.5%)
8 7919 bp 32.31 31.12 89.48
NECEvent2014_4_1_scaffold_363 174_001_scaffold_363
Species: Staphylococcus epidermidis (100%)
8 7646 bp 32.64 26.17 90.99
NECEvent2014_4_1_scaffold_369 174_001_scaffold_369
Species: Staphylococcus epidermidis (87.5%)
8 7549 bp 33.18 28.55 82.58
NECEvent2014_4_1_scaffold_385 174_001_scaffold_385
Species: Staphylococcus epidermidis (87.5%)
8 6655 bp 33.28 63.90 74.15
NECEvent2014_4_1_scaffold_406 174_001_scaffold_406
Species: Staphylococcus epidermidis (75%)
8 6054 bp 31.17 30.57 84.34
NECEvent2014_4_1_scaffold_427 174_001_scaffold_427
Species: Staphylococcus epidermidis (75%)
8 5473 bp 30.46 24.37 89.84
NECEvent2014_4_1_scaffold_499 174_001_scaffold_499
Species: Staphylococcus epidermidis (75%)
8 3980 bp 30.30 28.42 71.36
NECEvent2014_4_1_scaffold_314 174_001_scaffold_314
Species: Staphylococcus epidermidis (62.5%)
8 11725 bp 33.09 30.15 90.81
NECEvent2014_4_1_scaffold_349 174_001_scaffold_349
Species: Staphylococcus epidermidis (71.43%)
7 8415 bp 34.89 12.53 90.12
NECEvent2014_4_1_scaffold_362 174_001_scaffold_362
Species: Staphylococcus epidermidis (71.43%)
7 7708 bp 33.96 28.68 88.89
NECEvent2014_4_1_scaffold_367 174_001_scaffold_367
Species: Staphylococcus epidermidis (71.43%)
7 7606 bp 32.05 28.52 80.94
NECEvent2014_4_1_scaffold_378 174_001_scaffold_378
Species: Staphylococcus epidermidis (85.71%)
7 6994 bp 33.03 29.77 82.79
NECEvent2014_4_1_scaffold_401 174_001_scaffold_401
Species: Staphylococcus saprophyticus (57.14%)
7 6142 bp 31.18 39.34 86.50
NECEvent2014_4_1_scaffold_402 174_001_scaffold_402
Species: Staphylococcus epidermidis (85.71%)
7 6136 bp 30.13 29.85 86.34
NECEvent2014_4_1_scaffold_403 174_001_scaffold_403
Species: Staphylococcus aureus (57.14%)
7 6129 bp 30.90 14.81 78.95
NECEvent2014_4_1_scaffold_409 174_001_scaffold_409
Species: Staphylococcus epidermidis (71.43%)
7 5984 bp 30.51 29.63 74.80
NECEvent2014_4_1_scaffold_421 174_001_scaffold_421
Species: Staphylococcus epidermidis (57.14%)
7 5620 bp 27.99 12.36 85.62
NECEvent2014_4_1_scaffold_428 174_001_scaffold_428
Species: Staphylococcus epidermidis (85.71%)
7 5434 bp 30.14 27.55 78.23
NECEvent2014_4_1_scaffold_433 174_001_scaffold_433
Genus: Staphylococcus (71.43%)
7 5266 bp 28.86 13.19 34.30
NECEvent2014_4_1_scaffold_435 174_001_scaffold_435
Species: Staphylococcus epidermidis (85.71%)
7 5236 bp 28.69 15.04 79.24
NECEvent2014_4_1_scaffold_459 174_001_scaffold_459
Species: Staphylococcus epidermidis (85.71%)
7 4783 bp 31.97 25.59 92.52
NECEvent2014_4_1_scaffold_468 174_001_scaffold_468
Phylum: Firmicutes (57.14%)
7 4580 bp 31.97 31.44 79.13
NECEvent2014_4_1_scaffold_494 174_001_scaffold_494
Genus: Staphylococcus (85.71%)
7 4053 bp 29.95 16.80 84.53
NECEvent2014_4_1_scaffold_347 174_001_scaffold_347
Species: Staphylococcus epidermidis (100%)
6 8524 bp 34.37 25.73 84.89
Displaying items 51-100 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.