ggKbase home page

NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 501-512 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_1013 174_001_scaffold_1013 3 1559 bp 25.02 4.62 100.06
NECEvent2014_4_1_scaffold_1214 174_001_scaffold_1214
Genus: Staphylococcus (100%)
3 1339 bp 27.11 4.59 82.90
NECEvent2014_4_1_scaffold_794 174_001_scaffold_794
Species: human gut metagenome (66.67%)
3 2036 bp 29.27 4.57 99.90
NECEvent2014_4_1_scaffold_552 174_001_scaffold_552
Species: Staphylococcus sp. DORA_6_22 (75%)
4 3254 bp 34.91 4.56 76.71
NECEvent2014_4_1_scaffold_1203 174_001_scaffold_1203
Species: human gut metagenome (100%)
2 1351 bp 24.06 4.44 54.63
NECEvent2014_4_1_scaffold_1408 174_001_scaffold_1408
Species: human gut metagenome (100%)
1 1181 bp 28.11 4.19 60.71
NECEvent2014_4_1_scaffold_1352 174_001_scaffold_1352
Species: human gut metagenome (100%)
1 1226 bp 23.25 4.16 99.84
NECEvent2014_4_1_scaffold_722 174_001_scaffold_722
Species: Staphylococcus epidermidis (100%)
2 2201 bp 24.99 3.88 99.50
NECEvent2014_4_1_scaffold_661 174_001_scaffold_661
Species: Staphylococcus epidermidis (100%)
3 2417 bp 26.56 3.85 92.10
NECEvent2014_4_1_scaffold_1139 174_001_scaffold_1139
Species: human gut metagenome (66.67%)
3 1407 bp 28.71 3.62 72.92
NECEvent2014_4_1_scaffold_1501 174_001_scaffold_1501
Species: Staphylococcus epidermidis (100%)
2 1121 bp 36.66 3.48 57.00
NECEvent2014_4_1_scaffold_1251 174_001_scaffold_1251
Species: Staphylococcus epidermidis (100%)
3 1305 bp 36.86 3.45 96.78
Displaying items 501-512 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.