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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 1-50 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_1009 174_001_scaffold_1009
Domain: Bacteria (66.67%)
3 1563 bp 51.18 492.03 27.45
NECEvent2014_4_1_scaffold_1233 174_001_scaffold_1233
Species: Enterococcus faecium (100%)
1 1324 bp 36.25 197.13 88.60
NECEvent2014_4_1_scaffold_1025 174_001_scaffold_1025
Species: Staphylococcus epidermidis (100%)
1 1547 bp 30.77 119.17 52.75
NECEvent2014_4_1_scaffold_1021 174_001_scaffold_1021
Species: Staphylococcus warneri (100%)
1 1552 bp 28.80 113.66 99.94
NECEvent2014_4_1_scaffold_581 174_001_scaffold_581
Species: Staphylococcus epidermidis (66.67%)
3 2909 bp 28.57 91.11 66.31
NECEvent2014_4_1_scaffold_809 174_001_scaffold_809
Species: Staphylococcus aureus (50%)
2 2007 bp 29.05 79.52 76.83
NECEvent2014_4_1_scaffold_1201 174_001_scaffold_1201
Genus: Staphylococcus (75%)
4 1353 bp 28.90 75.17 82.26
NECEvent2014_4_1_scaffold_1613 174_001_scaffold_1613
Species: Streptococcus pneumoniae (100%)
1 1055 bp 27.30 69.67 52.61
NECEvent2014_4_1_scaffold_385 174_001_scaffold_385
Species: Staphylococcus epidermidis (87.5%)
8 6655 bp 33.28 63.90 74.15
NECEvent2014_4_1_scaffold_1320 174_001_scaffold_1320
Species: Staphylococcus epidermidis (100%)
3 1247 bp 25.74 62.67 84.68
NECEvent2014_4_1_scaffold_1382 174_001_scaffold_1382
Genus: Staphylococcus (66.67%)
3 1196 bp 31.52 62.08 59.45
NECEvent2014_4_1_scaffold_467 174_001_scaffold_467
Species: Enterococcus faecalis (50%)
6 4602 bp 35.79 62.06 76.47
NECEvent2014_4_1_scaffold_446 174_001_scaffold_446
Species: human gut metagenome (100%)
5 5075 bp 28.73 50.45 92.16
NECEvent2014_4_1_scaffold_480 174_001_scaffold_480
Genus: Staphylococcus (100%)
5 4340 bp 30.37 49.67 82.60
NECEvent2014_4_1_scaffold_1592 174_001_scaffold_1592
Species: Staphylococcus epidermidis (100%)
1 1065 bp 29.95 48.59 44.79
NECEvent2014_4_1_scaffold_1558 174_001_scaffold_1558
Species: Staphylococcus epidermidis (50%)
2 1087 bp 29.81 47.06 60.99
NECEvent2014_4_1_scaffold_602 174_001_scaffold_602
Species: Staphylococcus epidermidis (66.67%)
3 2784 bp 34.77 45.58 85.13
NECEvent2014_4_1_scaffold_1396 174_001_scaffold_1396
Species: Staphylococcus saprophyticus (100%)
1 1186 bp 34.23 45.03 65.01
NECEvent2014_4_1_scaffold_504 174_001_scaffold_504
Species: human gut metagenome (66.67%)
3 3859 bp 29.41 43.34 65.07
NECEvent2014_4_1_scaffold_869 174_001_scaffold_869
Species: Staphylococcus epidermidis (100%)
3 1864 bp 28.70 43.05 58.42
NECEvent2014_4_1_scaffold_967 174_001_scaffold_967
Species: Staphylococcus epidermidis (100%)
1 1634 bp 37.33 42.23 99.88
NECEvent2014_4_1_scaffold_697 174_001_scaffold_697
Species: Staphylococcus epidermidis (100%)
2 2269 bp 37.46 41.05 53.15
NECEvent2014_4_1_scaffold_655 174_001_scaffold_655
Species: Staphylococcus epidermidis (66.67%)
3 2473 bp 25.56 40.70 91.10
NECEvent2014_4_1_scaffold_1526 174_001_scaffold_1526
Species: Staphylococcus massiliensis (50%)
2 1107 bp 28.00 40.51 35.77
NECEvent2014_4_1_scaffold_327 174_001_scaffold_327
Class: Bacilli (71.43%)
14 10024 bp 27.68 39.98 60.96
NECEvent2014_4_1_scaffold_401 174_001_scaffold_401
Species: Staphylococcus saprophyticus (57.14%)
7 6142 bp 31.18 39.34 86.50
NECEvent2014_4_1_scaffold_737 174_001_scaffold_737
Species: Staphylococcus epidermidis (100%)
4 2155 bp 30.81 38.35 79.21
NECEvent2014_4_1_scaffold_1116 174_001_scaffold_1116
Species: Staphylococcus epidermidis (100%)
2 1445 bp 33.36 37.58 84.50
NECEvent2014_4_1_scaffold_434 174_001_scaffold_434
Genus: Staphylococcus (50%)
10 5249 bp 27.32 37.38 88.47
NECEvent2014_4_1_scaffold_1655 174_001_scaffold_1655
Species: Staphylococcus epidermidis (100%)
2 1033 bp 27.30 37.17 88.87
NECEvent2014_4_1_scaffold_1136 174_001_scaffold_1136
Species: Staphylococcus epidermidis (100%)
1 1413 bp 30.36 36.31 62.42
NECEvent2014_4_1_scaffold_1067 174_001_scaffold_1067
Species: Staphylococcus epidermidis (100%)
3 1496 bp 31.08 36.20 101.47
NECEvent2014_4_1_scaffold_939 174_001_scaffold_939
Species: Staphylococcus epidermidis (80%)
5 1694 bp 29.93 35.77 74.38
NECEvent2014_4_1_scaffold_1246 174_001_scaffold_1246
Species: Staphylococcus epidermidis (100%)
2 1307 bp 30.99 35.12 73.68
NECEvent2014_4_1_scaffold_938 174_001_scaffold_938
Species: Staphylococcus epidermidis (100%)
3 1697 bp 28.76 34.74 66.12
NECEvent2014_4_1_scaffold_523 174_001_scaffold_523
Species: Staphylococcus epidermidis (75%)
4 3693 bp 28.38 34.69 89.76
NECEvent2014_4_1_scaffold_900 174_001_scaffold_900
Species: human gut metagenome (100%)
2 1768 bp 30.77 34.02 75.00
NECEvent2014_4_1_scaffold_1517 174_001_scaffold_1517
Species: human gut metagenome (100%)
1 1111 bp 30.15 33.75 88.84
NECEvent2014_4_1_scaffold_1238 174_001_scaffold_1238
Species: human gut metagenome (50%)
2 1319 bp 31.99 33.43 54.36
NECEvent2014_4_1_scaffold_338 174_001_scaffold_338
Species: Staphylococcus epidermidis (66.67%)
9 8645 bp 31.17 33.23 83.46
NECEvent2014_4_1_scaffold_1283 174_001_scaffold_1283
Species: Staphylococcus epidermidis (100%)
4 1280 bp 31.41 33.05 104.30
NECEvent2014_4_1_scaffold_1314 174_001_scaffold_1314
Species: Staphylococcus sp. DORA_6_22 (66.67%)
3 1253 bp 26.82 33.04 77.81
NECEvent2014_4_1_scaffold_507 174_001_scaffold_507
Species: Staphylococcus epidermidis (75%)
4 3835 bp 31.53 32.97 91.21
NECEvent2014_4_1_scaffold_1312 174_001_scaffold_1312
Species: Staphylococcus epidermidis (100%)
1 1254 bp 33.25 32.78 65.55
NECEvent2014_4_1_scaffold_1090 174_001_scaffold_1090
Species: Staphylococcus epidermidis (100%)
2 1466 bp 30.83 32.74 95.36
NECEvent2014_4_1_scaffold_1438 174_001_scaffold_1438
Species: Staphylococcus epidermidis (100%)
2 1163 bp 30.52 32.63 85.90
NECEvent2014_4_1_scaffold_992 174_001_scaffold_992
Species: Staphylococcus epidermidis (100%)
3 1588 bp 26.32 32.40 72.73
NECEvent2014_4_1_scaffold_1254 174_001_scaffold_1254
Species: human gut metagenome (50%)
2 1304 bp 35.12 32.32 96.40
NECEvent2014_4_1_scaffold_1085 174_001_scaffold_1085
Species: Staphylococcus epidermidis (100%)
3 1472 bp 27.51 32.20 72.35
NECEvent2014_4_1_scaffold_635 174_001_scaffold_635
Species: Staphylococcus epidermidis (66.67%)
3 2567 bp 31.09 32.08 83.79
Displaying items 1-50 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.