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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 51-100 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_336 174_001_scaffold_336
Species: Staphylococcus epidermidis (80%)
10 9033 bp 33.13 31.82 83.26
NECEvent2014_4_1_scaffold_284 174_001_scaffold_284
Species: Staphylococcus epidermidis (83.33%)
12 14627 bp 30.23 31.76 82.41
NECEvent2014_4_1_scaffold_426 174_001_scaffold_426
Species: Staphylococcus epidermidis (80%)
5 5526 bp 30.00 31.60 70.09
NECEvent2014_4_1_scaffold_742 174_001_scaffold_742
Species: Staphylococcus epidermidis (66.67%)
3 2141 bp 26.20 31.60 41.48
NECEvent2014_4_1_scaffold_510 174_001_scaffold_510
Species: Staphylococcus epidermidis (66.67%)
3 3817 bp 31.70 31.52 80.88
NECEvent2014_4_1_scaffold_1394 174_001_scaffold_1394
Species: Staphylococcus epidermidis (100%)
1 1187 bp 39.26 31.47 99.83
NECEvent2014_4_1_scaffold_468 174_001_scaffold_468
Phylum: Firmicutes (57.14%)
7 4580 bp 31.97 31.44 79.13
NECEvent2014_4_1_scaffold_322 174_001_scaffold_322
Species: Staphylococcus epidermidis (77.78%)
9 10786 bp 31.62 31.37 81.91
NECEvent2014_4_1_scaffold_280 174_001_scaffold_280
Species: Staphylococcus epidermidis (93.33%)
15 14953 bp 31.54 31.30 76.74
NECEvent2014_4_1_scaffold_465 174_001_scaffold_465
Species: Staphylococcus epidermidis (60%)
5 4623 bp 29.61 31.21 86.11
NECEvent2014_4_1_scaffold_350 174_001_scaffold_350
Species: Staphylococcus epidermidis (91.67%)
12 8403 bp 31.54 31.13 71.19
NECEvent2014_4_1_scaffold_356 174_001_scaffold_356
Species: Staphylococcus epidermidis (62.5%)
8 7919 bp 32.31 31.12 89.48
NECEvent2014_4_1_scaffold_1045 174_001_scaffold_1045
Species: Staphylococcus epidermidis (100%)
2 1522 bp 31.60 31.04 98.75
NECEvent2014_4_1_scaffold_496 174_001_scaffold_496
Species: Staphylococcus epidermidis (75%)
4 4014 bp 29.42 31.02 72.94
NECEvent2014_4_1_scaffold_638 174_001_scaffold_638
Species: Staphylococcus epidermidis (100%)
2 2557 bp 30.70 30.97 91.63
NECEvent2014_4_1_scaffold_512 174_001_scaffold_512
Species: Staphylococcus epidermidis (100%)
4 3816 bp 32.31 30.97 87.11
NECEvent2014_4_1_scaffold_412 174_001_scaffold_412
Species: Staphylococcus epidermidis (100%)
6 5911 bp 30.45 30.91 68.31
NECEvent2014_4_1_scaffold_177 174_001_scaffold_177
Species: Staphylococcus epidermidis (69.23%)
26 31048 bp 32.22 30.90 87.47
NECEvent2014_4_1_scaffold_664 174_001_scaffold_664
Species: Staphylococcus epidermidis (100%)
2 2409 bp 35.24 30.88 90.91
NECEvent2014_4_1_scaffold_1050 174_001_scaffold_1050
Species: Staphylococcus epidermidis (100%)
3 1517 bp 29.40 30.75 96.90
NECEvent2014_4_1_scaffold_451 174_001_scaffold_451
Species: Staphylococcus epidermidis (100%)
6 4993 bp 33.41 30.70 87.18
NECEvent2014_4_1_scaffold_579 174_001_scaffold_579
Species: Staphylococcus epidermidis (50%)
2 2950 bp 34.17 30.66 70.27
NECEvent2014_4_1_scaffold_406 174_001_scaffold_406
Species: Staphylococcus epidermidis (75%)
8 6054 bp 31.17 30.57 84.34
NECEvent2014_4_1_scaffold_684 174_001_scaffold_684
Species: Staphylococcus sp. DORA_6_22 (66.67%)
3 2318 bp 36.28 30.54 99.78
NECEvent2014_4_1_scaffold_204 174_001_scaffold_204
Species: Staphylococcus epidermidis (77.27%)
22 24862 bp 30.64 30.53 82.08
NECEvent2014_4_1_scaffold_450 174_001_scaffold_450
Species: Staphylococcus epidermidis (83.33%)
6 4998 bp 30.03 30.52 95.56
NECEvent2014_4_1_scaffold_1089 174_001_scaffold_1089
Species: human gut metagenome (50%)
2 1467 bp 34.97 30.47 98.36
NECEvent2014_4_1_scaffold_251 174_001_scaffold_251
Species: Staphylococcus epidermidis (68.75%)
16 18627 bp 32.62 30.47 78.32
NECEvent2014_4_1_scaffold_546 174_001_scaffold_546
Species: Staphylococcus epidermidis (100%)
4 3306 bp 31.34 30.40 94.46
NECEvent2014_4_1_scaffold_1451 174_001_scaffold_1451
Species: Staphylococcus epidermidis (100%)
2 1155 bp 30.91 30.39 83.38
NECEvent2014_4_1_scaffold_470 174_001_scaffold_470
Species: Staphylococcus epidermidis (100%)
5 4562 bp 34.06 30.38 88.65
NECEvent2014_4_1_scaffold_486 174_001_scaffold_486
Species: Staphylococcus epidermidis (100%)
3 4175 bp 28.96 30.36 74.59
NECEvent2014_4_1_scaffold_1006 174_001_scaffold_1006
Species: Staphylococcus epidermidis (100%)
3 1571 bp 32.46 30.36 101.02
NECEvent2014_4_1_scaffold_294 174_001_scaffold_294
Species: Staphylococcus epidermidis (84.62%)
13 13147 bp 33.13 30.36 84.95
NECEvent2014_4_1_scaffold_1499 174_001_scaffold_1499
Species: human gut metagenome (50%)
2 1122 bp 30.04 30.35 51.34
NECEvent2014_4_1_scaffold_1235 174_001_scaffold_1235
Species: Staphylococcus epidermidis (100%)
2 1322 bp 29.35 30.30 91.91
NECEvent2014_4_1_scaffold_393 174_001_scaffold_393
Species: Staphylococcus epidermidis (75%)
4 6370 bp 36.01 30.28 93.67
NECEvent2014_4_1_scaffold_566 174_001_scaffold_566
Species: Staphylococcus epidermidis (100%)
4 3043 bp 36.25 30.27 94.05
NECEvent2014_4_1_scaffold_429 174_001_scaffold_429
Species: Staphylococcus epidermidis (83.33%)
6 5407 bp 31.24 30.24 86.17
NECEvent2014_4_1_scaffold_454 174_001_scaffold_454
Species: Staphylococcus epidermidis (100%)
5 4941 bp 31.73 30.24 81.00
NECEvent2014_4_1_scaffold_218 174_001_scaffold_218
Species: Staphylococcus epidermidis (80%)
25 22928 bp 30.14 30.19 83.98
NECEvent2014_4_1_scaffold_432 174_001_scaffold_432
Species: Staphylococcus epidermidis (100%)
5 5383 bp 33.29 30.15 85.94
NECEvent2014_4_1_scaffold_314 174_001_scaffold_314
Species: Staphylococcus epidermidis (62.5%)
8 11725 bp 33.09 30.15 90.81
NECEvent2014_4_1_scaffold_275 174_001_scaffold_275
Species: Staphylococcus epidermidis (80%)
15 15365 bp 34.35 30.03 83.82
NECEvent2014_4_1_scaffold_258 174_001_scaffold_258
Species: Staphylococcus epidermidis (96%)
25 17752 bp 27.07 29.98 54.94
NECEvent2014_4_1_scaffold_1401 174_001_scaffold_1401
Species: Staphylococcus epidermidis (50%)
2 1183 bp 31.53 29.92 99.92
NECEvent2014_4_1_scaffold_304 174_001_scaffold_304
Species: Staphylococcus epidermidis (91.67%)
12 12370 bp 34.44 29.89 84.88
NECEvent2014_4_1_scaffold_373 174_001_scaffold_373
Species: Staphylococcus epidermidis (88.89%)
9 7467 bp 33.12 29.85 88.91
NECEvent2014_4_1_scaffold_402 174_001_scaffold_402
Species: Staphylococcus epidermidis (85.71%)
7 6136 bp 30.13 29.85 86.34
NECEvent2014_4_1_scaffold_514 174_001_scaffold_514
Species: Staphylococcus epidermidis (50%)
6 3760 bp 32.07 29.84 73.01
Displaying items 51-100 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.