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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 151-200 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_399 174_001_scaffold_399
Species: Staphylococcus epidermidis (100%)
6 6204 bp 34.88 28.31 88.54
NECEvent2014_4_1_scaffold_268 174_001_scaffold_268
Species: Staphylococcus epidermidis (83.33%)
18 16327 bp 32.95 28.29 87.19
NECEvent2014_4_1_scaffold_1091 174_001_scaffold_1091
Species: Staphylococcus epidermidis (100%)
1 1464 bp 44.19 28.28 99.80
NECEvent2014_4_1_scaffold_506 174_001_scaffold_506
Species: Staphylococcus epidermidis (66.67%)
3 3841 bp 31.87 28.23 93.26
NECEvent2014_4_1_scaffold_814 174_001_scaffold_814 3 1994 bp 34.15 28.21 87.41
NECEvent2014_4_1_scaffold_249 174_001_scaffold_249
Species: Staphylococcus epidermidis (81.25%)
16 18938 bp 32.81 28.16 88.01
NECEvent2014_4_1_scaffold_474 174_001_scaffold_474
Species: Staphylococcus epidermidis (100%)
4 4502 bp 30.83 28.15 78.10
NECEvent2014_4_1_scaffold_173 174_001_scaffold_173
Species: Staphylococcus epidermidis (67.39%)
46 32075 bp 33.54 28.14 89.20
NECEvent2014_4_1_scaffold_462 174_001_scaffold_462
Species: Staphylococcus epidermidis (60%)
5 4706 bp 37.57 28.11 90.46
NECEvent2014_4_1_scaffold_799 174_001_scaffold_799
Species: Staphylococcus epidermidis (100%)
3 2028 bp 33.43 28.03 98.37
NECEvent2014_4_1_scaffold_456 174_001_scaffold_456
Species: Staphylococcus epidermidis (100%)
2 4832 bp 33.90 28.00 91.89
NECEvent2014_4_1_scaffold_1257 174_001_scaffold_1257
Species: Staphylococcus epidermidis (100%)
4 1302 bp 33.10 28.00 80.41
NECEvent2014_4_1_scaffold_1147 174_001_scaffold_1147
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1404 bp 33.76 27.99 78.21
NECEvent2014_4_1_scaffold_257 174_001_scaffold_257
Species: Staphylococcus epidermidis (76.19%)
21 17760 bp 27.22 27.92 83.60
NECEvent2014_4_1_scaffold_826 174_001_scaffold_826
Species: human gut metagenome (100%)
2 1966 bp 31.54 27.92 97.81
NECEvent2014_4_1_scaffold_878 174_001_scaffold_878
Species: Staphylococcus epidermidis (100%)
3 1827 bp 32.29 27.91 80.79
NECEvent2014_4_1_scaffold_1486 174_001_scaffold_1486
Species: Staphylococcus epidermidis (100%)
2 1134 bp 30.69 27.91 78.57
NECEvent2014_4_1_scaffold_482 174_001_scaffold_482
Species: Staphylococcus epidermidis (60%)
5 4299 bp 30.26 27.91 82.90
NECEvent2014_4_1_scaffold_787 174_001_scaffold_787
Species: Staphylococcus epidermidis (100%)
2 2050 bp 28.59 27.88 66.44
NECEvent2014_4_1_scaffold_276 174_001_scaffold_276
Species: Staphylococcus epidermidis (88.24%)
17 15331 bp 32.82 27.83 89.65
NECEvent2014_4_1_scaffold_1316 174_001_scaffold_1316
Species: Staphylococcus sp. DORA_6_22 (66.67%)
3 1251 bp 30.78 27.82 66.67
NECEvent2014_4_1_scaffold_1491 174_001_scaffold_1491
Species: Staphylococcus epidermidis (50%)
2 1130 bp 32.39 27.74 93.72
NECEvent2014_4_1_scaffold_271 174_001_scaffold_271
Species: Staphylococcus epidermidis (63.16%)
19 16055 bp 30.99 27.74 82.39
NECEvent2014_4_1_scaffold_86 174_001_scaffold_86
Species: Staphylococcus epidermidis (72%)
50 67346 bp 31.57 27.73 88.46
NECEvent2014_4_1_scaffold_176 174_001_scaffold_176
Species: Staphylococcus epidermidis (77.78%)
27 31174 bp 31.75 27.73 84.46
NECEvent2014_4_1_scaffold_786 174_001_scaffold_786
Species: Staphylococcus epidermidis (50%)
2 2051 bp 31.98 27.72 100.20
NECEvent2014_4_1_scaffold_893 174_001_scaffold_893
Species: Staphylococcus epidermidis (50%)
2 1781 bp 32.96 27.71 81.70
NECEvent2014_4_1_scaffold_657 174_001_scaffold_657
Species: Staphylococcus lentus (50%)
2 2461 bp 30.88 27.67 49.25
NECEvent2014_4_1_scaffold_904 174_001_scaffold_904
Species: Staphylococcus epidermidis (100%)
3 1763 bp 31.71 27.65 79.81
NECEvent2014_4_1_scaffold_560 174_001_scaffold_560
Species: Staphylococcus epidermidis (75%)
4 3110 bp 30.93 27.64 88.26
NECEvent2014_4_1_scaffold_1171 174_001_scaffold_1171
Species: Staphylococcus epidermidis (100%)
1 1385 bp 36.75 27.62 99.86
NECEvent2014_4_1_scaffold_535 174_001_scaffold_535
Species: Staphylococcus epidermidis (100%)
4 3601 bp 33.60 27.62 83.06
NECEvent2014_4_1_scaffold_121 174_001_scaffold_121
Species: Staphylococcus epidermidis (71.79%)
39 47430 bp 32.54 27.61 88.53
NECEvent2014_4_1_scaffold_291 174_001_scaffold_291
Species: Staphylococcus epidermidis (75%)
12 13812 bp 32.49 27.60 91.46
NECEvent2014_4_1_scaffold_321 174_001_scaffold_321
Species: Staphylococcus epidermidis (84.62%)
13 11067 bp 30.97 27.58 84.82
NECEvent2014_4_1_scaffold_929 174_001_scaffold_929
Species: Staphylococcus epidermidis (100%)
2 1724 bp 30.86 27.58 75.70
NECEvent2014_4_1_scaffold_428 174_001_scaffold_428
Species: Staphylococcus epidermidis (85.71%)
7 5434 bp 30.14 27.55 78.23
NECEvent2014_4_1_scaffold_237 174_001_scaffold_237
Species: Staphylococcus epidermidis (72.22%)
18 20012 bp 33.02 27.55 85.30
NECEvent2014_4_1_scaffold_608 174_001_scaffold_608
Species: Staphylococcus epidermidis (100%)
4 2734 bp 30.83 27.54 85.81
NECEvent2014_4_1_scaffold_431 174_001_scaffold_431
Species: Staphylococcus epidermidis (75%)
4 5386 bp 34.39 27.54 93.80
NECEvent2014_4_1_scaffold_414 174_001_scaffold_414
Species: Staphylococcus epidermidis (100%)
6 5824 bp 34.07 27.48 94.93
NECEvent2014_4_1_scaffold_830 174_001_scaffold_830
Species: Staphylococcus epidermidis (100%)
2 1950 bp 35.23 27.46 83.85
NECEvent2014_4_1_scaffold_430 174_001_scaffold_430
Species: Staphylococcus epidermidis (100%)
2 5396 bp 37.51 27.41 97.52
NECEvent2014_4_1_scaffold_310 174_001_scaffold_310
Species: Staphylococcus epidermidis (53.85%)
13 11881 bp 32.35 27.36 91.89
NECEvent2014_4_1_scaffold_586 174_001_scaffold_586
Species: Staphylococcus epidermidis (60%)
5 2875 bp 32.10 27.34 101.32
NECEvent2014_4_1_scaffold_621 174_001_scaffold_621
Species: Staphylococcus epidermidis (100%)
2 2667 bp 33.63 27.33 86.61
NECEvent2014_4_1_scaffold_392 174_001_scaffold_392
Species: Staphylococcus epidermidis (100%)
5 6395 bp 33.12 27.33 89.04
NECEvent2014_4_1_scaffold_396 174_001_scaffold_396
Species: Staphylococcus epidermidis (83.33%)
6 6282 bp 31.45 27.32 76.27
NECEvent2014_4_1_scaffold_968 174_001_scaffold_968
Species: Staphylococcus epidermidis (100%)
1 1632 bp 31.80 27.30 72.61
NECEvent2014_4_1_scaffold_1159 174_001_scaffold_1159
Species: Staphylococcus epidermidis (100%)
2 1392 bp 31.75 27.26 83.84
Displaying items 151-200 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.