ggKbase home page

NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 51-100 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_788 174_001_scaffold_788
Species: human gut metagenome (100%)
4 2050 bp 25.12 7.32 97.32
NECEvent2014_4_1_scaffold_1436 174_001_scaffold_1436
Genus: Staphylococcus (100%)
3 1163 bp 29.41 7.35 71.20
NECEvent2014_4_1_scaffold_728 174_001_scaffold_728
Species: Staphylococcus epidermidis (100%)
1 2183 bp 34.72 7.42 99.91
NECEvent2014_4_1_scaffold_1377 174_001_scaffold_1377
Species: Staphylococcus epidermidis (100%)
2 1203 bp 31.42 7.48 66.33
NECEvent2014_4_1_scaffold_606 174_001_scaffold_606
Species: human gut metagenome (83.33%)
6 2761 bp 25.10 7.50 91.27
NECEvent2014_4_1_scaffold_419 174_001_scaffold_419
Species: Staphylococcus epidermidis (50%)
4 5667 bp 27.02 7.73 83.70
NECEvent2014_4_1_scaffold_1480 174_001_scaffold_1480
Species: Staphylococcus epidermidis (100%)
1 1137 bp 24.27 7.78 7.39
NECEvent2014_4_1_scaffold_985 174_001_scaffold_985
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1603 bp 30.07 7.95 35.56
NECEvent2014_4_1_scaffold_962 174_001_scaffold_962
Species: Staphylococcus epidermidis (100%)
2 1639 bp 26.17 8.05 37.52
NECEvent2014_4_1_scaffold_1537 174_001_scaffold_1537
Species: human gut metagenome (50%)
2 1098 bp 28.96 8.06 60.38
NECEvent2014_4_1_scaffold_947 174_001_scaffold_947
Species: Staphylococcus aureus (66.67%)
3 1674 bp 30.76 8.15 97.85
NECEvent2014_4_1_scaffold_1343 174_001_scaffold_1343
Species: Staphylococcus epidermidis (100%)
2 1234 bp 30.39 8.39 83.39
NECEvent2014_4_1_scaffold_1057 174_001_scaffold_1057
Species: Staphylococcus epidermidis (66.67%)
3 1509 bp 29.36 8.45 56.06
NECEvent2014_4_1_scaffold_1578 174_001_scaffold_1578
Species: Staphylococcus epidermidis (100%)
2 1078 bp 32.56 8.77 63.17
NECEvent2014_4_1_scaffold_1605 174_001_scaffold_1605
Species: Staphylococcus epidermidis (50%)
2 1059 bp 29.08 8.78 66.86
NECEvent2014_4_1_scaffold_1638 174_001_scaffold_1638
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1042 bp 30.81 8.93 63.92
NECEvent2014_4_1_scaffold_1015 174_001_scaffold_1015
Species: Staphylococcus epidermidis (100%)
2 1557 bp 26.01 9.15 38.15
NECEvent2014_4_1_scaffold_1109 174_001_scaffold_1109
Species: human gut metagenome (66.67%)
3 1450 bp 32.34 9.21 74.90
NECEvent2014_4_1_scaffold_1122 174_001_scaffold_1122
Species: human gut metagenome (75%)
4 1436 bp 31.13 9.30 78.97
NECEvent2014_4_1_scaffold_1374 174_001_scaffold_1374
Species: Staphylococcus epidermidis (66.67%)
3 1206 bp 27.53 9.33 57.71
NECEvent2014_4_1_scaffold_1624 174_001_scaffold_1624
Species: Staphylococcus epidermidis (50%)
2 1046 bp 31.93 9.61 81.17
NECEvent2014_4_1_scaffold_1379 174_001_scaffold_1379
Species: Staphylococcus epidermidis (100%)
2 1202 bp 28.95 9.61 75.62
NECEvent2014_4_1_scaffold_344 174_001_scaffold_344
Genus: Staphylococcus (55.56%)
18 8583 bp 31.08 10.01 71.86
NECEvent2014_4_1_scaffold_1622 174_001_scaffold_1622
Species: human gut metagenome (50%)
2 1047 bp 31.81 10.03 44.99
NECEvent2014_4_1_scaffold_1628 174_001_scaffold_1628
Species: Staphylococcus epidermidis (50%)
2 1045 bp 29.38 10.33 57.13
NECEvent2014_4_1_scaffold_1285 174_001_scaffold_1285
Species: Staphylococcus epidermidis (100%)
2 1277 bp 29.13 10.34 81.75
NECEvent2014_4_1_scaffold_1529 174_001_scaffold_1529
Species: Staphylococcus epidermidis (100%)
3 1106 bp 36.26 10.44 91.95
NECEvent2014_4_1_scaffold_1418 174_001_scaffold_1418
Species: Staphylococcus epidermidis (50%)
2 1173 bp 30.95 10.61 99.74
NECEvent2014_4_1_scaffold_1018 174_001_scaffold_1018
Species: Staphylococcus epidermidis (100%)
3 1553 bp 28.20 10.62 62.01
NECEvent2014_4_1_scaffold_631 174_001_scaffold_631
Genus: Staphylococcus (60%)
5 2612 bp 30.02 10.68 73.62
NECEvent2014_4_1_scaffold_1028 174_001_scaffold_1028
Species: Staphylococcus epidermidis (100%)
1 1543 bp 30.52 10.69 72.52
NECEvent2014_4_1_scaffold_886 174_001_scaffold_886
Species: Staphylococcus epidermidis (50%)
4 1801 bp 29.76 10.91 87.12
NECEvent2014_4_1_scaffold_1037 174_001_scaffold_1037
Species: Staphylococcus epidermidis (100%)
2 1532 bp 26.57 10.97 78.52
NECEvent2014_4_1_scaffold_493 174_001_scaffold_493
Species: Staphylococcus sp. DORA_6_22 (100%)
1 4055 bp 26.98 11.17 76.94
NECEvent2014_4_1_scaffold_613 174_001_scaffold_613
Species: Staphylococcus aureus (60%)
5 2710 bp 29.59 11.18 81.14
NECEvent2014_4_1_scaffold_1296 174_001_scaffold_1296
Species: Staphylococcus epidermidis (100%)
2 1266 bp 31.04 11.49 50.47
NECEvent2014_4_1_scaffold_1429 174_001_scaffold_1429
Species: Staphylococcus epidermidis (100%)
1 1166 bp 27.36 11.58 34.99
NECEvent2014_4_1_scaffold_1020 174_001_scaffold_1020
Species: Staphylococcus epidermidis (100%)
2 1552 bp 30.61 11.69 86.60
NECEvent2014_4_1_scaffold_1008 174_001_scaffold_1008
Genus: Staphylococcus (66.67%)
3 1563 bp 28.85 11.80 84.45
NECEvent2014_4_1_scaffold_1597 174_001_scaffold_1597
Species: Staphylococcus epidermidis (100%)
1 1063 bp 30.76 11.85 71.68
NECEvent2014_4_1_scaffold_673 174_001_scaffold_673
Species: Staphylococcus aureus (66.67%)
3 2365 bp 27.19 12.05 86.26
NECEvent2014_4_1_scaffold_1134 174_001_scaffold_1134
Species: Staphylococcus aureus (100%)
1 1415 bp 30.81 12.19 62.54
NECEvent2014_4_1_scaffold_262 174_001_scaffold_262
Genus: Staphylococcus (52.94%)
17 17203 bp 32.26 12.20 72.00
NECEvent2014_4_1_scaffold_421 174_001_scaffold_421
Species: Staphylococcus epidermidis (57.14%)
7 5620 bp 27.99 12.36 85.62
NECEvent2014_4_1_scaffold_349 174_001_scaffold_349
Species: Staphylococcus epidermidis (71.43%)
7 8415 bp 34.89 12.53 90.12
NECEvent2014_4_1_scaffold_1200 174_001_scaffold_1200
Species: Staphylococcus epidermidis (100%)
1 1354 bp 24.52 12.85 99.93
NECEvent2014_4_1_scaffold_433 174_001_scaffold_433
Genus: Staphylococcus (71.43%)
7 5266 bp 28.86 13.19 34.30
NECEvent2014_4_1_scaffold_1635 174_001_scaffold_1635
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1043 bp 31.35 13.23 63.85
NECEvent2014_4_1_scaffold_458 174_001_scaffold_458
Species: Staphylococcus epidermidis (100%)
5 4784 bp 31.61 13.23 66.41
NECEvent2014_4_1_scaffold_444 174_001_scaffold_444
Species: Staphylococcus aureus (100%)
3 5085 bp 34.18 13.86 85.25
Displaying items 51-100 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.