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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 351-400 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_456 174_001_scaffold_456
Species: Staphylococcus epidermidis (100%)
2 4832 bp 33.90 28.00 91.89
NECEvent2014_4_1_scaffold_1257 174_001_scaffold_1257
Species: Staphylococcus epidermidis (100%)
4 1302 bp 33.10 28.00 80.41
NECEvent2014_4_1_scaffold_799 174_001_scaffold_799
Species: Staphylococcus epidermidis (100%)
3 2028 bp 33.43 28.03 98.37
NECEvent2014_4_1_scaffold_462 174_001_scaffold_462
Species: Staphylococcus epidermidis (60%)
5 4706 bp 37.57 28.11 90.46
NECEvent2014_4_1_scaffold_173 174_001_scaffold_173
Species: Staphylococcus epidermidis (67.39%)
46 32075 bp 33.54 28.14 89.20
NECEvent2014_4_1_scaffold_474 174_001_scaffold_474
Species: Staphylococcus epidermidis (100%)
4 4502 bp 30.83 28.15 78.10
NECEvent2014_4_1_scaffold_249 174_001_scaffold_249
Species: Staphylococcus epidermidis (81.25%)
16 18938 bp 32.81 28.16 88.01
NECEvent2014_4_1_scaffold_814 174_001_scaffold_814 3 1994 bp 34.15 28.21 87.41
NECEvent2014_4_1_scaffold_506 174_001_scaffold_506
Species: Staphylococcus epidermidis (66.67%)
3 3841 bp 31.87 28.23 93.26
NECEvent2014_4_1_scaffold_1091 174_001_scaffold_1091
Species: Staphylococcus epidermidis (100%)
1 1464 bp 44.19 28.28 99.80
NECEvent2014_4_1_scaffold_268 174_001_scaffold_268
Species: Staphylococcus epidermidis (83.33%)
18 16327 bp 32.95 28.29 87.19
NECEvent2014_4_1_scaffold_399 174_001_scaffold_399
Species: Staphylococcus epidermidis (100%)
6 6204 bp 34.88 28.31 88.54
NECEvent2014_4_1_scaffold_626 174_001_scaffold_626
Species: Staphylococcus epidermidis (100%)
3 2632 bp 30.66 28.38 90.62
NECEvent2014_4_1_scaffold_348 174_001_scaffold_348
Species: Staphylococcus epidermidis (55.56%)
9 8517 bp 29.09 28.39 85.56
NECEvent2014_4_1_scaffold_1179 174_001_scaffold_1179
Species: Staphylococcus epidermidis (100%)
2 1378 bp 34.03 28.41 100.15
NECEvent2014_4_1_scaffold_499 174_001_scaffold_499
Species: Staphylococcus epidermidis (75%)
8 3980 bp 30.30 28.42 71.36
NECEvent2014_4_1_scaffold_382 174_001_scaffold_382
Species: Staphylococcus epidermidis (90%)
10 6807 bp 31.41 28.43 92.11
NECEvent2014_4_1_scaffold_316 174_001_scaffold_316
Species: Staphylococcus epidermidis (86.67%)
15 11334 bp 30.53 28.47 79.86
NECEvent2014_4_1_scaffold_367 174_001_scaffold_367
Species: Staphylococcus epidermidis (71.43%)
7 7606 bp 32.05 28.52 80.94
NECEvent2014_4_1_scaffold_351 174_001_scaffold_351
Species: Staphylococcus epidermidis (60%)
5 8389 bp 35.36 28.54 94.70
NECEvent2014_4_1_scaffold_369 174_001_scaffold_369
Species: Staphylococcus epidermidis (87.5%)
8 7549 bp 33.18 28.55 82.58
NECEvent2014_4_1_scaffold_331 174_001_scaffold_331
Species: Staphylococcus epidermidis (75%)
12 9919 bp 31.61 28.58 88.80
NECEvent2014_4_1_scaffold_255 174_001_scaffold_255
Species: Staphylococcus epidermidis (86.67%)
15 18344 bp 33.37 28.60 88.51
NECEvent2014_4_1_scaffold_590 174_001_scaffold_590
Species: Staphylococcus epidermidis (75%)
4 2852 bp 34.96 28.61 99.19
NECEvent2014_4_1_scaffold_867 174_001_scaffold_867
Species: Staphylococcus epidermidis (100%)
2 1866 bp 33.82 28.62 90.03
NECEvent2014_4_1_scaffold_487 174_001_scaffold_487
Species: Staphylococcus epidermidis (100%)
5 4120 bp 32.86 28.62 82.14
NECEvent2014_4_1_scaffold_739 174_001_scaffold_739
Species: Staphylococcus epidermidis (100%)
3 2151 bp 31.89 28.66 78.94
NECEvent2014_4_1_scaffold_169 174_001_scaffold_169
Species: Staphylococcus epidermidis (93.55%)
31 33152 bp 34.55 28.67 90.85
NECEvent2014_4_1_scaffold_362 174_001_scaffold_362
Species: Staphylococcus epidermidis (71.43%)
7 7708 bp 33.96 28.68 88.89
NECEvent2014_4_1_scaffold_598 174_001_scaffold_598
Species: Staphylococcus epidermidis (60%)
5 2813 bp 32.35 28.69 101.53
NECEvent2014_4_1_scaffold_526 174_001_scaffold_526
Species: Staphylococcus epidermidis (75%)
4 3659 bp 30.25 28.70 96.09
NECEvent2014_4_1_scaffold_1011 174_001_scaffold_1011
Species: Staphylococcus epidermidis (100%)
2 1562 bp 33.99 28.81 99.87
NECEvent2014_4_1_scaffold_168 174_001_scaffold_168
Species: Staphylococcus epidermidis (82.35%)
34 33173 bp 31.28 28.84 81.80
NECEvent2014_4_1_scaffold_449 174_001_scaffold_449
Species: Staphylococcus epidermidis (100%)
5 5012 bp 34.08 28.88 90.98
NECEvent2014_4_1_scaffold_976 174_001_scaffold_976
Species: Staphylococcus epidermidis (100%)
1 1620 bp 33.58 28.89 97.96
NECEvent2014_4_1_scaffold_896 174_001_scaffold_896
Species: Staphylococcus epidermidis (100%)
3 1775 bp 35.27 28.90 94.48
NECEvent2014_4_1_scaffold_390 174_001_scaffold_390
Species: Staphylococcus epidermidis (100%)
5 6463 bp 33.28 28.92 91.17
NECEvent2014_4_1_scaffold_1441 174_001_scaffold_1441
Species: Staphylococcus epidermidis (100%)
2 1162 bp 28.74 28.92 63.77
NECEvent2014_4_1_scaffold_418 174_001_scaffold_418
Genus: Staphylococcus (80%)
5 5720 bp 35.49 28.92 85.23
NECEvent2014_4_1_scaffold_457 174_001_scaffold_457
Species: Staphylococcus epidermidis (80%)
5 4828 bp 31.40 28.93 82.77
NECEvent2014_4_1_scaffold_1084 174_001_scaffold_1084
Species: Staphylococcus epidermidis (100%)
1 1475 bp 34.64 28.98 89.29
NECEvent2014_4_1_scaffold_557 174_001_scaffold_557
Species: Staphylococcus epidermidis (83.33%)
6 3191 bp 32.40 29.00 81.23
NECEvent2014_4_1_scaffold_811 174_001_scaffold_811
Species: Staphylococcus epidermidis (100%)
2 2004 bp 30.34 29.04 84.28
NECEvent2014_4_1_scaffold_518 174_001_scaffold_518
Species: Staphylococcus epidermidis (83.33%)
6 3727 bp 29.41 29.26 83.79
NECEvent2014_4_1_scaffold_1546 174_001_scaffold_1546
Species: Staphylococcus epidermidis (66.67%)
3 1094 bp 29.52 29.34 70.75
NECEvent2014_4_1_scaffold_388 174_001_scaffold_388
Species: Staphylococcus epidermidis (50%)
4 6553 bp 31.51 29.37 92.02
NECEvent2014_4_1_scaffold_828 174_001_scaffold_828
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1959 bp 34.66 29.40 95.87
NECEvent2014_4_1_scaffold_1464 174_001_scaffold_1464
Species: Staphylococcus epidermidis (100%)
1 1150 bp 27.13 29.48 76.17
NECEvent2014_4_1_scaffold_1104 174_001_scaffold_1104
Species: Staphylococcus epidermidis (100%)
3 1454 bp 28.47 29.50 71.18
NECEvent2014_4_1_scaffold_122 174_001_scaffold_122
Species: Staphylococcus epidermidis (80.95%)
42 47297 bp 33.04 29.51 84.09
Displaying items 351-400 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.