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NECEvent2014_4_1_Staphylococcus_epidermidis_32_27

In projects: NECEvent2014_4_1

Consensus taxonomy: Staphylococcus epidermidis  →  Staphylococcus  →  Bacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

16S on Strep-like contig (OK)

Displaying items 451-500 of 512 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_1_scaffold_356 174_001_scaffold_356
Species: Staphylococcus epidermidis (62.5%)
8 7919 bp 32.31 31.12 89.48
NECEvent2014_4_1_scaffold_350 174_001_scaffold_350
Species: Staphylococcus epidermidis (91.67%)
12 8403 bp 31.54 31.13 71.19
NECEvent2014_4_1_scaffold_465 174_001_scaffold_465
Species: Staphylococcus epidermidis (60%)
5 4623 bp 29.61 31.21 86.11
NECEvent2014_4_1_scaffold_280 174_001_scaffold_280
Species: Staphylococcus epidermidis (93.33%)
15 14953 bp 31.54 31.30 76.74
NECEvent2014_4_1_scaffold_322 174_001_scaffold_322
Species: Staphylococcus epidermidis (77.78%)
9 10786 bp 31.62 31.37 81.91
NECEvent2014_4_1_scaffold_468 174_001_scaffold_468
Phylum: Firmicutes (57.14%)
7 4580 bp 31.97 31.44 79.13
NECEvent2014_4_1_scaffold_1394 174_001_scaffold_1394
Species: Staphylococcus epidermidis (100%)
1 1187 bp 39.26 31.47 99.83
NECEvent2014_4_1_scaffold_510 174_001_scaffold_510
Species: Staphylococcus epidermidis (66.67%)
3 3817 bp 31.70 31.52 80.88
NECEvent2014_4_1_scaffold_426 174_001_scaffold_426
Species: Staphylococcus epidermidis (80%)
5 5526 bp 30.00 31.60 70.09
NECEvent2014_4_1_scaffold_742 174_001_scaffold_742
Species: Staphylococcus epidermidis (66.67%)
3 2141 bp 26.20 31.60 41.48
NECEvent2014_4_1_scaffold_284 174_001_scaffold_284
Species: Staphylococcus epidermidis (83.33%)
12 14627 bp 30.23 31.76 82.41
NECEvent2014_4_1_scaffold_336 174_001_scaffold_336
Species: Staphylococcus epidermidis (80%)
10 9033 bp 33.13 31.82 83.26
NECEvent2014_4_1_scaffold_635 174_001_scaffold_635
Species: Staphylococcus epidermidis (66.67%)
3 2567 bp 31.09 32.08 83.79
NECEvent2014_4_1_scaffold_1085 174_001_scaffold_1085
Species: Staphylococcus epidermidis (100%)
3 1472 bp 27.51 32.20 72.35
NECEvent2014_4_1_scaffold_1254 174_001_scaffold_1254
Species: human gut metagenome (50%)
2 1304 bp 35.12 32.32 96.40
NECEvent2014_4_1_scaffold_992 174_001_scaffold_992
Species: Staphylococcus epidermidis (100%)
3 1588 bp 26.32 32.40 72.73
NECEvent2014_4_1_scaffold_1438 174_001_scaffold_1438
Species: Staphylococcus epidermidis (100%)
2 1163 bp 30.52 32.63 85.90
NECEvent2014_4_1_scaffold_1090 174_001_scaffold_1090
Species: Staphylococcus epidermidis (100%)
2 1466 bp 30.83 32.74 95.36
NECEvent2014_4_1_scaffold_1312 174_001_scaffold_1312
Species: Staphylococcus epidermidis (100%)
1 1254 bp 33.25 32.78 65.55
NECEvent2014_4_1_scaffold_507 174_001_scaffold_507
Species: Staphylococcus epidermidis (75%)
4 3835 bp 31.53 32.97 91.21
NECEvent2014_4_1_scaffold_1314 174_001_scaffold_1314
Species: Staphylococcus sp. DORA_6_22 (66.67%)
3 1253 bp 26.82 33.04 77.81
NECEvent2014_4_1_scaffold_1283 174_001_scaffold_1283
Species: Staphylococcus epidermidis (100%)
4 1280 bp 31.41 33.05 104.30
NECEvent2014_4_1_scaffold_338 174_001_scaffold_338
Species: Staphylococcus epidermidis (66.67%)
9 8645 bp 31.17 33.23 83.46
NECEvent2014_4_1_scaffold_1238 174_001_scaffold_1238
Species: human gut metagenome (50%)
2 1319 bp 31.99 33.43 54.36
NECEvent2014_4_1_scaffold_1517 174_001_scaffold_1517
Species: human gut metagenome (100%)
1 1111 bp 30.15 33.75 88.84
NECEvent2014_4_1_scaffold_900 174_001_scaffold_900
Species: human gut metagenome (100%)
2 1768 bp 30.77 34.02 75.00
NECEvent2014_4_1_scaffold_523 174_001_scaffold_523
Species: Staphylococcus epidermidis (75%)
4 3693 bp 28.38 34.69 89.76
NECEvent2014_4_1_scaffold_938 174_001_scaffold_938
Species: Staphylococcus epidermidis (100%)
3 1697 bp 28.76 34.74 66.12
NECEvent2014_4_1_scaffold_1246 174_001_scaffold_1246
Species: Staphylococcus epidermidis (100%)
2 1307 bp 30.99 35.12 73.68
NECEvent2014_4_1_scaffold_939 174_001_scaffold_939
Species: Staphylococcus epidermidis (80%)
5 1694 bp 29.93 35.77 74.38
NECEvent2014_4_1_scaffold_1067 174_001_scaffold_1067
Species: Staphylococcus epidermidis (100%)
3 1496 bp 31.08 36.20 101.47
NECEvent2014_4_1_scaffold_1136 174_001_scaffold_1136
Species: Staphylococcus epidermidis (100%)
1 1413 bp 30.36 36.31 62.42
NECEvent2014_4_1_scaffold_1655 174_001_scaffold_1655
Species: Staphylococcus epidermidis (100%)
2 1033 bp 27.30 37.17 88.87
NECEvent2014_4_1_scaffold_434 174_001_scaffold_434
Genus: Staphylococcus (50%)
10 5249 bp 27.32 37.38 88.47
NECEvent2014_4_1_scaffold_1116 174_001_scaffold_1116
Species: Staphylococcus epidermidis (100%)
2 1445 bp 33.36 37.58 84.50
NECEvent2014_4_1_scaffold_737 174_001_scaffold_737
Species: Staphylococcus epidermidis (100%)
4 2155 bp 30.81 38.35 79.21
NECEvent2014_4_1_scaffold_401 174_001_scaffold_401
Species: Staphylococcus saprophyticus (57.14%)
7 6142 bp 31.18 39.34 86.50
NECEvent2014_4_1_scaffold_327 174_001_scaffold_327
Class: Bacilli (71.43%)
14 10024 bp 27.68 39.98 60.96
NECEvent2014_4_1_scaffold_1526 174_001_scaffold_1526
Species: Staphylococcus massiliensis (50%)
2 1107 bp 28.00 40.51 35.77
NECEvent2014_4_1_scaffold_655 174_001_scaffold_655
Species: Staphylococcus epidermidis (66.67%)
3 2473 bp 25.56 40.70 91.10
NECEvent2014_4_1_scaffold_697 174_001_scaffold_697
Species: Staphylococcus epidermidis (100%)
2 2269 bp 37.46 41.05 53.15
NECEvent2014_4_1_scaffold_967 174_001_scaffold_967
Species: Staphylococcus epidermidis (100%)
1 1634 bp 37.33 42.23 99.88
NECEvent2014_4_1_scaffold_869 174_001_scaffold_869
Species: Staphylococcus epidermidis (100%)
3 1864 bp 28.70 43.05 58.42
NECEvent2014_4_1_scaffold_504 174_001_scaffold_504
Species: human gut metagenome (66.67%)
3 3859 bp 29.41 43.34 65.07
NECEvent2014_4_1_scaffold_1396 174_001_scaffold_1396
Species: Staphylococcus saprophyticus (100%)
1 1186 bp 34.23 45.03 65.01
NECEvent2014_4_1_scaffold_602 174_001_scaffold_602
Species: Staphylococcus epidermidis (66.67%)
3 2784 bp 34.77 45.58 85.13
NECEvent2014_4_1_scaffold_1558 174_001_scaffold_1558
Species: Staphylococcus epidermidis (50%)
2 1087 bp 29.81 47.06 60.99
NECEvent2014_4_1_scaffold_1592 174_001_scaffold_1592
Species: Staphylococcus epidermidis (100%)
1 1065 bp 29.95 48.59 44.79
NECEvent2014_4_1_scaffold_480 174_001_scaffold_480
Genus: Staphylococcus (100%)
5 4340 bp 30.37 49.67 82.60
NECEvent2014_4_1_scaffold_446 174_001_scaffold_446
Species: human gut metagenome (100%)
5 5075 bp 28.73 50.45 92.16
Displaying items 451-500 of 512 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.