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NECEvent2014_4_3_scaffold_9

Alias: 174_003_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 167 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_3_scaffold_9_1
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

241..5517
DNA (5277bp) protein (1759aa)
Diguanylate cyclase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JHH4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ97596.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
diguanylate cyclase
NECEvent2014_4_3_scaffold_9_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5619..6164
DNA (546bp) protein (182aa)
Cna protein B-type domain n=4 Tax=Clostridium butyricum RepID=B1QXF2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87511.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Cna B domain protein
NECEvent2014_4_3_scaffold_9_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6372..6809
DNA (438bp) protein (146aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Clostridium butyricum RepID=M8K2S0_CLOBU
NECEvent2014_4_3_scaffold_9_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6935..8860)
DNA (1926bp) protein (642aa)
ABC transporter, ATP-binding protein n=3 Tax=Clostridium butyricum RepID=B1QXF0_CLOBU rbh
ATPase components of ABC transporter {ECO:0000313|EMBL:KJZ87532.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN1
ydiF4; ABC transporter ATP-binding protein YdiF
NECEvent2014_4_3_scaffold_9_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9264..9854
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium butyricum DKU-01 RepID=M8J756_CLOBU rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KHD15886.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;
transcriptional regulator
NECEvent2014_4_3_scaffold_9_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9935..10570)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YU55_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87596.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_3_scaffold_9_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10579..11046)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ADV6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87599.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_3_scaffold_9_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11188..12498
DNA (1311bp) protein (437aa)
csd1; cysteine desulfurase Csd (EC:2.8.1.7)
Aminotransferase n=4 Tax=Clostridium butyricum RepID=B1QXE6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30988.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_4_3_scaffold_9_9
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12571..13785)
DNA (1215bp) protein (405aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|
pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pfp (EC:2.7.1.90)
Phosphofructokinase domain protein n=3 Tax=Clostridium butyricum RepID=B1QXE5_CLOBU rbh
NECEvent2014_4_3_scaffold_9_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14167..14718
DNA (552bp) protein (184aa)
Membrane protein n=2 Tax=Clostridium butyricum RepID=M8J751_CLOBU rbh
Integral membrane protein {ECO:0000313|EMBL:KJZ87543.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
membrane protein
NECEvent2014_4_3_scaffold_9_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14779..15201
DNA (423bp) protein (141aa)
Transcriptional regulator, Fur family n=4 Tax=Clostridium butyricum RepID=B1QXE3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87544.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
Fe2+/Zn2+ uptake regulation protein
NECEvent2014_4_3_scaffold_9_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15251..16051)
DNA (801bp) protein (267aa)
D-alanine--poly(Phosphoribitol) ligase subunit 2 {ECO:0000313|EMBL:KJZ97655.1}; EC=6.1.1.13 {ECO:0000313|EMBL:KJZ97655.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clos
High-affinity Zinc uptake system membrane protein ZnuB n=2 Tax=Clostridium butyricum RepID=B1QXE2_CLOBU rbh
ABC-type Mn2+/Zn2+ transport system, permease component
NECEvent2014_4_3_scaffold_9_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16073..16744)
DNA (672bp) protein (224aa)
Putative metal ion ABC transporter, ATP-binding protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K2R1_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30983.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
metal transport system ATP-binding protein
NECEvent2014_4_3_scaffold_9_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16987..18168
DNA (1182bp) protein (394aa)
Putative D-alanine transferase n=2 Tax=Clostridium butyricum RepID=B1QXE0_CLOBU rbh
Poly(Glycerophosphate chain) D-alanine transfer protein DltD {ECO:0000313|EMBL:KJZ87551.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
dltD1; D-alanyl-lipoteichoic acid biosynthesis protein DltD
NECEvent2014_4_3_scaffold_9_15
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18292..19809
DNA (1518bp) protein (506aa)
D-alanine--poly(phosphoribitol) ligase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00593}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00593};; D-alanine-D-alanyl carrier protein ligase {ECO:0000256|HAMAP-Rule:MF
dltA2; D-alanine--poly(phosphoribitol) ligase subunit 1 (EC:6.1.1.13)
D-alanine--poly(phosphoribitol) ligase subunit 1 n=2 Tax=Clostridium butyricum RepID=B1QXD9_CLOBU rbh
NECEvent2014_4_3_scaffold_9_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19806..20960
DNA (1155bp) protein (385aa)
UPI00039D4D67 related cluster n=1 Tax=unknown RepID=UPI00039D4D67 rbh
D-alanyl transfer protein DltB {ECO:0000313|EMBL:KJZ87552.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
membrane bound O-acyl transferase, MBOAT family protein
NECEvent2014_4_3_scaffold_9_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21072..21299
DNA (228bp) protein (76aa)
D-alanine--poly(phosphoribitol) ligase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00565}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00565};; D-alanyl carrier protein {ECO:0000256|HAMAP-Rule:MF_00565}; TaxID=99
D-alanine--poly(phosphoribitol) ligase, subunit 2 (EC:6.1.1.13)
D-alanine--poly(phosphoribitol) ligase subunit 2 n=4 Tax=Clostridium butyricum RepID=B1QXD7_CLOBU
NECEvent2014_4_3_scaffold_9_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21470..21880)
DNA (411bp) protein (137aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=M8K2Q5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87594.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_3_scaffold_9_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22207..22608
DNA (402bp) protein (134aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QXD5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87574.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_3_scaffold_9_20
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22763..24550
DNA (1788bp) protein (596aa)
yjbG; oligoendopeptidase F (EC:3.4.24.-)
Oligoendopeptidase F n=2 Tax=Clostridium butyricum RepID=B1QXD4_CLOBU rbh
Oligoendopeptidase F {ECO:0000313|EMBL:KJZ87548.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
NECEvent2014_4_3_scaffold_9_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24705..25766
DNA (1062bp) protein (354aa)
gluP; rhomboid protease GluP (EC:3.4.21.105)
UPI0003D61AEF related cluster n=1 Tax=unknown RepID=UPI0003D61AEF rbh
Rhomboid family protein {ECO:0000313|EMBL:ETI89162.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
NECEvent2014_4_3_scaffold_9_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25827..26462
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=R0AH88_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87570.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_3_scaffold_9_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26641..27987
DNA (1347bp) protein (449aa)
gluD; glutamate dehydrogenase (EC:1.4.1.2)
Glutamate dehydrogenase n=4 Tax=Clostridium butyricum RepID=B1QXD1_CLOBU rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoN
NECEvent2014_4_3_scaffold_9_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28636..30024
DNA (1389bp) protein (463aa)
Glycosyl transferase, family 2 n=2 Tax=Clostridium butyricum RepID=M8KAV9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ31510.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
glycosyl transferase family protein
NECEvent2014_4_3_scaffold_9_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30601..32550
DNA (1950bp) protein (650aa)
DNA gyrase subunit B {ECO:0000313|EMBL:EEP55547.1}; EC=5.99.1.3 {ECO:0000313|EMBL:EEP55547.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
DNA gyrase subunit B n=3 Tax=Clostridium butyricum RepID=B1QXC9_CLOBU rbh
DNA topoisomerase IV subunit B
NECEvent2014_4_3_scaffold_9_26
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32616..35531
DNA (2916bp) protein (972aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiacea
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A4U6_CLOBU rbh
DNA topoisomerase IV subunit A
NECEvent2014_4_3_scaffold_9_27
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35728..36282
DNA (555bp) protein (185aa)
UPI0003AAC03D related cluster n=1 Tax=unknown RepID=UPI0003AAC03D rbh
DJ-1/YajL/PfpI superfamily protein {ECO:0000313|EMBL:KJZ87576.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125
DJ-1 family protein
NECEvent2014_4_3_scaffold_9_28
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36346..38112
DNA (1767bp) protein (589aa)
Cysteine desulfurase {ECO:0000313|EMBL:KJZ97612.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KJZ97612.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
recJ2; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YV86_CLOBU rbh
NECEvent2014_4_3_scaffold_9_29
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38554..39606
DNA (1053bp) protein (351aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YVP1_CLOBU rbh
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
NECEvent2014_4_3_scaffold_9_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39759..40184
DNA (426bp) protein (142aa)
UPI0003D64940 related cluster n=1 Tax=unknown RepID=UPI0003D64940
Flavodoxin {ECO:0000313|EMBL:KJZ87581.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative flavoprotein
Displaying items 1-30 of 167 in total

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