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NECEvent2014_4_4_scaffold_292

Alias: 174_004_scaffold_292

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_4_scaffold_292_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..3493)
DNA (3492bp) protein (1164aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R6C6_CLOSW rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL05336.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040
hypothetical protein
NECEvent2014_4_4_scaffold_292_2
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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comp(3507..4085)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CDT6_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDA63442.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
NECEvent2014_4_4_scaffold_292_3
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4086..4688)
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R6C8_CLOSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL05338.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040
NECEvent2014_4_4_scaffold_292_4
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4763..4969)
DNA (207bp) protein (69aa)
Predicted transcriptional regulator n=3 Tax=Firmicutes RepID=D4LLY5_9FIRM
Predicted transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBL20846.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/
NECEvent2014_4_4_scaffold_292_5
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5172..5507)
DNA (336bp) protein (112aa)
Transcriptional regulator n=6 Tax=root RepID=E7GBU6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK45943.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faeca
Predicted transcriptional regulator with C-terminal CBS domains
NECEvent2014_4_4_scaffold_292_6
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5715..7628)
DNA (1914bp) protein (638aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysS; Lysine-tRNA ligase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5JC73_9FIRM rbh
NECEvent2014_4_4_scaffold_292_7
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7648..8133)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=3 Tax=Peptostreptococcus RepID=D3MQ68_9FIRM rbh
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1035196 species="Bacteri
greA; transcription elongation factor GreA
NECEvent2014_4_4_scaffold_292_8
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8331..9290)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1035196 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
tRNA-dihydrouridine synthase n=2 Tax=Peptostreptococcus RepID=L1MMX4_9FIRM rbh
dusB; tRNA-dihydrouridine synthase
NECEvent2014_4_4_scaffold_292_9
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9300..10070)
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase n=3 Tax=Peptostreptococcus RepID=D3MQ70_9FIRM rbh
NECEvent2014_4_4_scaffold_292_10
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10337..11320
DNA (984bp) protein (328aa)
Biotin-(Acetyl-CoA-carboxylase) ligase n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5JMM9_9FIRM rbh
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978
birA; BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase
NECEvent2014_4_4_scaffold_292_11
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11395..12060)
DNA (666bp) protein (222aa)
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5JN84_9FIRM rbh
Macrolide export ATP-binding/permease protein MacB {ECO:0000313|EMBL:CCY50297.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; env
ABC transporter ATP-binding protein
NECEvent2014_4_4_scaffold_292_12
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12071..14653)
DNA (2583bp) protein (861aa)
Efflux ABC transporter permease protein n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5J6U5_9FIRM rbh
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CCY50298.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environmental
ABC-type transport system, permease
NECEvent2014_4_4_scaffold_292_13
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14886..15830
DNA (945bp) protein (315aa)
Putative two-component sensor histidine kinase n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5JC84_9FIRM rbh
Putative two-component sensor histidine kinase {ECO:0000313|EMBL:CCY50299.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environ
two-component hybrid histidine kinase
NECEvent2014_4_4_scaffold_292_14
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15923..16657
DNA (735bp) protein (245aa)
Response regulator receiver domain protein n=2 Tax=Peptostreptococcus RepID=D3MQ75_9FIRM rbh
Two-component response regulator {ECO:0000313|EMBL:CCY50300.1}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environmental samples
two-component response regulator
NECEvent2014_4_4_scaffold_292_15
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16660..16884)
DNA (225bp) protein (75aa)
TipAS antibiotic-recognition domain protein n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MQ76_9FIRM
TipAS antibiotic-recognition domain protein {ECO:0000313|EMBL:EFD05661.1}; TaxID=596329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="P
MerR family transcriptional regulator
Displaying 15 items

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