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NECEvent2014_4_5_scaffold_200

Alias: 174_005_scaffold_200

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_5_scaffold_200_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(127..576)
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=4 Tax=Clostridium butyricum RepID=B1QYR9_CLOBU
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
nrdR; transcriptional repressor NrdR
NECEvent2014_4_5_scaffold_200_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(649..906)
DNA (258bp) protein (86aa)
YlmC/YmxH family sporulation protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AV85_CLOBU
YlmC/YmxH family sporulation protein {ECO:0000313|EMBL:ENZ35947.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
sporulation protein, YlmC/YmxH family
NECEvent2014_4_5_scaffold_200_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(988..1812)
DNA (825bp) protein (275aa)
RNA polymerase sigma factor n=4 Tax=Clostridium butyricum RepID=B1QYS1_CLOBU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
sigG; RNA polymerase sigma-G factor SigG
NECEvent2014_4_5_scaffold_200_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1895..2602)
DNA (708bp) protein (236aa)
RNA polymerase sigma factor n=5 Tax=Clostridium butyricum RepID=B1QYS2_CLOBU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
sporulation sigma factor SigE
NECEvent2014_4_5_scaffold_200_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2616..3419)
DNA (804bp) protein (268aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; St
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT50_CLOBU rbh
peptidase U4, sporulation factor SpoIIGA
NECEvent2014_4_5_scaffold_200_6
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3890..5023)
DNA (1134bp) protein (378aa)
Cell division protein FtsZ n=4 Tax=Clostridium butyricum RepID=B1QYS4_CLOBU rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sour
ftsZ; cell division protein FtsZ
NECEvent2014_4_5_scaffold_200_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5038..6303)
DNA (1266bp) protein (422aa)
Cell division protein FtsA n=2 Tax=Clostridium butyricum RepID=M8J904_CLOBU rbh
Cell division protein FtsA {ECO:0000313|EMBL:KJZ83084.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
actin-like ATPase involved in cell division
NECEvent2014_4_5_scaffold_200_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6541..7572)
DNA (1032bp) protein (344aa)
Twitching mobility protein n=2 Tax=Clostridium butyricum RepID=M8KCW2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83083.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pilT; twitching mobility protein PilT
NECEvent2014_4_5_scaffold_200_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7743..8441)
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=4 Tax=Clostridium butyricum RepID=B1QYS7_CLOBU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
sigK; RNA polymerase sigma-28 factor SigK
NECEvent2014_4_5_scaffold_200_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8514..10040)
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT46_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35939.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
cell division protein FtsI/penicillin-binding protein 2
NECEvent2014_4_5_scaffold_200_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10242..11480)
DNA (1239bp) protein (413aa)
Collagenase n=3 Tax=Clostridium butyricum RepID=B1QYS9_CLOBU rbh
Peptidase, U32 family large subunit C1 {ECO:0000313|EMBL:KJZ83079.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
peptidase U32
NECEvent2014_4_5_scaffold_200_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11489..12133)
DNA (645bp) protein (215aa)
yrrM; putative O-methyltransferase YrrM (EC:2.1.1.-)
O-methyltransferase family protein n=3 Tax=Clostridium butyricum RepID=B1QYT0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84616.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_4_5_scaffold_200_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12151..13176)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1QYT1_CLOBU rbh
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EEP54807.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. Bo
aminodeoxychorismate lyase
NECEvent2014_4_5_scaffold_200_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13269..15095)
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205 rbh
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
NECEvent2014_4_5_scaffold_200_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15416..17083)
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
UPI0003D62493 related cluster n=1 Tax=unknown RepID=UPI0003D62493 rbh
Beta-lactamase protein {ECO:0000313|EMBL:ETI91277.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
NECEvent2014_4_5_scaffold_200_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17147..17611)
DNA (465bp) protein (155aa)
Transcriptional regulator, Fur family n=3 Tax=Clostridium butyricum RepID=B1QYT4_CLOBU rbh
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:KJZ83106.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN1
fur; ferric uptake regulation protein Fur
NECEvent2014_4_5_scaffold_200_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17672..17950)
DNA (279bp) protein (93aa)
UPI0003D5F038 related cluster n=1 Tax=unknown RepID=UPI0003D5F038
Uncharacterized protein {ECO:0000313|EMBL:KHD15577.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
NECEvent2014_4_5_scaffold_200_18
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18099..18521)
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1523156 speci
Putative Holliday junction resolvase n=4 Tax=Clostridium butyricum RepID=B1QYT6_CLOBU
Holliday junction resolvase-like protein
NECEvent2014_4_5_scaffold_200_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18569..18826)
DNA (258bp) protein (86aa)
UPF0297 protein CBY_2615 n=4 Tax=Clostridium butyricum RepID=B1QYT7_CLOBU
UPF0297 protein CLP_2735 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
hypothetical protein
NECEvent2014_4_5_scaffold_200_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18966..21605)
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|SAAS:SAAS00015673};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
alaS; alanine--tRNA ligase AlaS (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT38_CLOBU rbh
NECEvent2014_4_5_scaffold_200_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22062..23090)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AHT2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35928.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
permease
NECEvent2014_4_5_scaffold_200_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23071..23571)
DNA (501bp) protein (167aa)
PRC-barrel domain protein n=2 Tax=Clostridium butyricum RepID=M8J921_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35927.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_4_5_scaffold_200_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23712..24794)
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiace
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7R6_CLOBU rbh
NECEvent2014_4_5_scaffold_200_24
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24800..25234)
DNA (435bp) protein (145aa)
FeS cluster assembly scaffold protein NifU n=2 Tax=Clostridium butyricum RepID=M8K4P7_CLOBU
Phosphate transport system regulatory protein PhoU {ECO:0000313|EMBL:KJZ84610.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostri
nifU; FeS cluster assembly scaffold protein NifU
NECEvent2014_4_5_scaffold_200_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25236..26417)
DNA (1182bp) protein (394aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1403941 species="Bacteri
Cysteine desulfurase n=4 Tax=Clostridium butyricum RepID=B1QYU3_CLOBU rbh
class V aminotransferase
NECEvent2014_4_5_scaffold_200_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26422..26874)
DNA (453bp) protein (151aa)
Rrf2 family protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AHS7_CLOBU rbh
Rrf2 family protein {ECO:0000313|EMBL:ENZ35923.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
cymR; HTH-type transcriptional regulator CymR
NECEvent2014_4_5_scaffold_200_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27113..28354)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AV64_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KHD15585.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
recombination factor protein RarA
NECEvent2014_4_5_scaffold_200_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28814..29614)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z7Q9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35921.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ABC transporter
NECEvent2014_4_5_scaffold_200_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29580..30494)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z864_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35920.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ABC-type uncharacterized transport system, permease component
NECEvent2014_4_5_scaffold_200_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30494..31510)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT31_CLOBU rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHD15588.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyric
hypothetical protein
Displaying 30 items

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