ggKbase home page

NECEvent2014_4_5_scaffold_285

Alias: 174_005_scaffold_285

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_5_scaffold_285_1

Not on your lists

375..617
DNA (243bp) protein (81aa)
Conserved domain protein n=3 Tax=Clostridium butyricum RepID=C4ICV4_CLOBU
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ETJ16625.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
AbrB family transcriptional regulator
NECEvent2014_4_5_scaffold_285_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(714..1559)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
rsmI; ribosomal RNA small subunit methyltransferase I (EC:2.1.1.198)
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A2F2_CLOBU rbh
NECEvent2014_4_5_scaffold_285_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1563..2315)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AD30_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30664.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
small; methyltransferase Small
NECEvent2014_4_5_scaffold_285_4
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2710..3990)
DNA (1281bp) protein (427aa)
NLP/P60 protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHW2_CLOBU rbh
NLP/P60 family protein {ECO:0000313|EMBL:KJZ94546.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
protein P54
NECEvent2014_4_5_scaffold_285_trna_1
unknown

Not on your lists

4281..4353
DNA (73bp)
transferRNA
NECEvent2014_4_5_scaffold_285_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4440..5084
DNA (645bp) protein (215aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4ICV0_CLOBU rbh
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:EEP55867.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostrid
haloacid dehalogenase superfamily
NECEvent2014_4_5_scaffold_285_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5176..5919)
DNA (744bp) protein (248aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Foldase protein PrsA n=3 Tax=Clostridium butyricum RepID=B1R0E0_CLOBU rbh
PpiC-type peptidyl-prolyl cis-trans isomerase
NECEvent2014_4_5_scaffold_285_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6071..6748
DNA (678bp) protein (226aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
ung; uracil-DNA glycosylase Ung (EC:3.2.2.27)
Uracil-DNA glycosylase n=2 Tax=Clostridium butyricum RepID=M8JN51_CLOBU rbh
NECEvent2014_4_5_scaffold_285_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6833..7018)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AD36_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ85700.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
NECEvent2014_4_5_scaffold_285_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7259..7669
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8KHV8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30670.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_4_5_scaffold_285_trna_2
unknown

Not on your lists

comp(7884..7956)
DNA (73bp)
transferRNA
NECEvent2014_4_5_scaffold_285_10

Not on your lists

comp(8279..8908)
DNA (630bp) protein (210aa)
Resolvase/recombinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX5_CLOBU rbh
Resolvase/recombinase {ECO:0000313|EMBL:ETJ16634.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
site-specific recombinase, DNA invertase Pin
NECEvent2014_4_5_scaffold_285_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9672..10571)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEY4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30672.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
DeoR-family transcriptional regulator
NECEvent2014_4_5_scaffold_285_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10623..11276)
DNA (654bp) protein (218aa)
Phosphorylated carbohydrates phosphatase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JN46_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94656.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
HAD-superfamily hydrolase
NECEvent2014_4_5_scaffold_285_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11589..12539
DNA (951bp) protein (317aa)
Ser/Thr protein phosphatase family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9L2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ94635.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
metallophosphoesterase
NECEvent2014_4_5_scaffold_285_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12733..13470
DNA (738bp) protein (246aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=632245 spec
cobB3; NAD-dependent protein deacetylase (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8KHV3_CLOBU rbh
NECEvent2014_4_5_scaffold_285_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13518..13991)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JDX0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:EEP55837.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT
hypothetical protein
NECEvent2014_4_5_scaffold_285_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13972..14193)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 PF5_CLOBU">RepID=M8JPF5_CLOBU
Transcriptional regulator {ECO:0000313|EMBL:ENZ30677.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_4_5_scaffold_285_17
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14499..14651)
DNA (153bp) protein (51aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R0C8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87986.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_5_scaffold_285_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14942..15379
DNA (438bp) protein (146aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1R0C7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87992.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_5_scaffold_285_19

Not on your lists

comp(15851..16135)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JDW6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETJ16643.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
NECEvent2014_4_5_scaffold_285_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16352..18439)
DNA (2088bp) protein (696aa)
Translation elongation factor G n=2 Tax=Clostridium butyricum RepID=B1R0B8_CLOBU rbh
Translation elongation factor G {ECO:0000313|EMBL:EEP55838.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 st
fusA2; elongation factor G
NECEvent2014_4_5_scaffold_285_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18765..20237
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YTF7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30690.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
dolichyl-phosphate-mannose-mannosyltransferase family protein
NECEvent2014_4_5_scaffold_285_22
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20334..21320)
DNA (987bp) protein (329aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:KJZ87984.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KJZ87984.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
GtrA family protein n=2 Tax=Clostridium butyricum RepID=M8KHU6_CLOBU rbh
putative phosphoserine phosphatase
NECEvent2014_4_5_scaffold_285_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21499..22362)
DNA (864bp) protein (288aa)
Prenyltransferase, UbiA family n=2 Tax=Clostridium butyricum RepID=B1R0B5_CLOBU rbh
Prenyltransferase, UbiA family {ECO:0000313|EMBL:EEP55881.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str
4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
NECEvent2014_4_5_scaffold_285_24
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22750..24282)
DNA (1533bp) protein (511aa)
P-aminobenzoyl-glutamate transporter (AbgT) family, permease protein n=3 Tax=Clostridium butyricum RepID=B1R0B4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ97212.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
aminobenzoyl-glutamate transport protein
Displaying 26 items

View Taxonomy