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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 651-700 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3360 174_005_scaffold_3360
Species: Eggerthella lenta (100%)
1 1394 bp 68.87 5.27 85.44
NECEvent2014_4_5_scaffold_2266 174_005_scaffold_2266
Species: Eggerthella sp. HGA1 (50%)
4 2458 bp 65.34 4.03 85.44
NECEvent2014_4_5_scaffold_3194 174_005_scaffold_3194
Species: Eggerthella lenta (100%)
2 1493 bp 64.97 4.92 85.40
NECEvent2014_4_5_scaffold_2581 174_005_scaffold_2581
Species: Eggerthella lenta (100%)
2 2031 bp 59.92 4.87 85.38
NECEvent2014_4_5_scaffold_2647 174_005_scaffold_2647
Species: Eggerthella sp. HGA1 (100%)
3 1965 bp 62.85 5.19 85.19
NECEvent2014_4_5_scaffold_2737 174_005_scaffold_2737
Species: Eggerthella sp. HGA1 (100%)
2 1863 bp 64.25 4.27 85.19
NECEvent2014_4_5_scaffold_3564 174_005_scaffold_3564
Species: Eggerthella sp. HGA1 (100%)
1 1289 bp 65.09 3.61 85.18
NECEvent2014_4_5_scaffold_3217 174_005_scaffold_3217
Species: Eggerthella sp. HGA1 (66.67%)
3 1483 bp 65.75 4.86 85.17
NECEvent2014_4_5_scaffold_1788 174_005_scaffold_1788
Species: Eggerthella lenta (66.67%)
3 3429 bp 68.94 5.34 85.13
NECEvent2014_4_5_scaffold_2665 174_005_scaffold_2665
Order: Eggerthellales (66.67%)
3 1946 bp 66.91 5.24 85.10
NECEvent2014_4_5_scaffold_2013 174_005_scaffold_2013
Species: Eggerthella lenta (66.67%)
3 2888 bp 63.85 5.14 85.08
NECEvent2014_4_5_scaffold_2350 174_005_scaffold_2350
Species: Eggerthella lenta (50%)
4 2346 bp 57.89 5.63 85.00
NECEvent2014_4_5_scaffold_1944 174_005_scaffold_1944
Species: Eggerthella lenta (66.67%)
3 3040 bp 62.66 5.08 84.97
NECEvent2014_4_5_scaffold_2183 174_005_scaffold_2183
Species: Eggerthella sp. HGA1 (50%)
4 2596 bp 63.71 4.74 84.94
NECEvent2014_4_5_scaffold_3249 174_005_scaffold_3249
Species: Eggerthella lenta (100%)
1 1463 bp 68.97 5.54 84.89
NECEvent2014_4_5_scaffold_2434 174_005_scaffold_2434
Species: Eggerthella lenta (50%)
2 2244 bp 64.88 5.08 84.89
NECEvent2014_4_5_scaffold_2630 174_005_scaffold_2630
Genus: Eggerthella (66.67%)
3 1979 bp 68.92 4.32 84.89
NECEvent2014_4_5_scaffold_2326 174_005_scaffold_2326
Species: Eggerthella sp. HGA1 (66.67%)
3 2375 bp 63.87 4.48 84.88
NECEvent2014_4_5_scaffold_4082 174_005_scaffold_4082
Species: Peptoclostridium difficile (50%)
2 1064 bp 69.27 3.67 84.87
NECEvent2014_4_5_scaffold_1785 174_005_scaffold_1785
Species: Peptoclostridium difficile (80%)
5 3440 bp 68.37 5.10 84.85
NECEvent2014_4_5_scaffold_2011 174_005_scaffold_2011
Species: Eggerthella sp. HGA1 (66.67%)
3 2889 bp 65.46 4.47 84.84
NECEvent2014_4_5_scaffold_3522 174_005_scaffold_3522
Species: Eggerthella sp. HGA1 (66.67%)
3 1313 bp 66.64 6.17 84.77
NECEvent2014_4_5_scaffold_4110 174_005_scaffold_4110
Species: Eggerthella sp. HGA1 (100%)
2 1055 bp 65.21 5.55 84.74
NECEvent2014_4_5_scaffold_2310 174_005_scaffold_2310
Species: Eggerthella sp. HGA1 (50%)
2 2392 bp 63.59 3.76 84.66
NECEvent2014_4_5_scaffold_2491 174_005_scaffold_2491
Species: Eggerthella sp. HGA1 (66.67%)
3 2155 bp 63.02 4.45 84.64
NECEvent2014_4_5_scaffold_3051 174_005_scaffold_3051
Species: Eggerthella lenta (100%)
2 1582 bp 65.11 6.26 84.58
NECEvent2014_4_5_scaffold_2593 174_005_scaffold_2593
Species: Eggerthella sp. HGA1 (66.67%)
3 2015 bp 65.96 4.99 84.57
NECEvent2014_4_5_scaffold_3694 174_005_scaffold_3694
Genus: Eggerthella (50%)
4 1221 bp 56.51 5.65 84.52
NECEvent2014_4_5_scaffold_3368 174_005_scaffold_3368
Species: Eggerthella lenta (100%)
1 1388 bp 65.49 4.54 84.51
NECEvent2014_4_5_scaffold_2300 174_005_scaffold_2300
Species: Eggerthella sp. HGA1 (66.67%)
3 2411 bp 65.57 5.41 84.49
NECEvent2014_4_5_scaffold_2022 174_005_scaffold_2022
Species: Eggerthella sp. HGA1 (66.67%)
3 2871 bp 64.86 4.44 84.43
NECEvent2014_4_5_scaffold_3225 174_005_scaffold_3225
Species: Eggerthella sp. HGA1 (100%)
2 1479 bp 62.00 5.38 84.38
NECEvent2014_4_5_scaffold_1284 174_005_scaffold_1284
Species: Eggerthella sp. HGA1 (60%)
5 5412 bp 63.90 6.21 84.37
NECEvent2014_4_5_scaffold_1951 174_005_scaffold_1951
Species: Eggerthella lenta (50%)
4 3023 bp 60.04 4.22 84.35
NECEvent2014_4_5_scaffold_3727 174_005_scaffold_3727
Species: Eggerthella lenta (100%)
1 1206 bp 62.52 3.48 84.33
NECEvent2014_4_5_scaffold_2672 174_005_scaffold_2672
Species: Eggerthella sp. HGA1 (50%)
2 1939 bp 66.94 5.34 84.32
NECEvent2014_4_5_scaffold_2569 174_005_scaffold_2569
Species: Eggerthella sp. HGA1 (100%)
2 2047 bp 66.93 4.69 84.27
NECEvent2014_4_5_scaffold_1303 174_005_scaffold_1303
Order: Eggerthellales (55.56%)
9 5305 bp 57.49 4.69 84.26
NECEvent2014_4_5_scaffold_1900 174_005_scaffold_1900
Species: Gordonibacter pamelaeae (75%)
4 3162 bp 59.71 5.22 84.25
NECEvent2014_4_5_scaffold_2857 174_005_scaffold_2857
Species: Eggerthella sp. HGA1 (100%)
2 1768 bp 62.84 6.79 84.16
NECEvent2014_4_5_scaffold_2594 174_005_scaffold_2594
Species: Eggerthella lenta (66.67%)
3 2015 bp 66.60 5.96 84.12
NECEvent2014_4_5_scaffold_2371 174_005_scaffold_2371
Species: Eggerthella sp. HGA1 (100%)
1 2319 bp 63.61 4.40 84.09
NECEvent2014_4_5_scaffold_4042 174_005_scaffold_4042
Species: Eggerthella lenta (100%)
2 1078 bp 58.72 6.26 84.04
NECEvent2014_4_5_scaffold_1883 174_005_scaffold_1883
Species: Eggerthella sp. HGA1 (100%)
3 3200 bp 67.72 5.16 84.00
NECEvent2014_4_5_scaffold_3373 174_005_scaffold_3373
Species: Eggerthella lenta (100%)
2 1386 bp 61.54 4.55 83.98
NECEvent2014_4_5_scaffold_3619 174_005_scaffold_3619
Species: Eggerthella sp. HGA1 (100%)
1 1258 bp 64.55 5.84 83.94
NECEvent2014_4_5_scaffold_2365 174_005_scaffold_2365
Species: Eggerthella sp. HGA1 (66.67%)
3 2331 bp 63.49 4.95 83.91
NECEvent2014_4_5_scaffold_3108 174_005_scaffold_3108
Species: Peptoclostridium difficile (66.67%)
3 1543 bp 68.89 4.37 83.80
NECEvent2014_4_5_scaffold_2601 174_005_scaffold_2601
Species: Eggerthella sp. HGA1 (50%)
2 2012 bp 65.11 5.82 83.80
NECEvent2014_4_5_scaffold_1227 174_005_scaffold_1227
Species: Peptoclostridium difficile (60%)
5 5729 bp 61.15 4.32 83.73
Displaying items 651-700 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.