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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 701-750 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_1749 174_005_scaffold_1749
Species: Eggerthella lenta (100%)
3 3526 bp 65.57 4.89 83.72
NECEvent2014_4_5_scaffold_1588 174_005_scaffold_1588
Species: Eggerthella lenta (71.43%)
7 4033 bp 66.60 5.36 83.68
NECEvent2014_4_5_scaffold_2081 174_005_scaffold_2081
Species: Eggerthella sp. HGA1 (50%)
4 2755 bp 60.69 5.12 83.67
NECEvent2014_4_5_scaffold_2210 174_005_scaffold_2210
Species: Eggerthella sp. HGA1 (50%)
4 2565 bp 62.50 6.02 83.63
NECEvent2014_4_5_scaffold_2116 174_005_scaffold_2116
Species: Peptoclostridium difficile (66.67%)
3 2705 bp 65.55 4.99 83.62
NECEvent2014_4_5_scaffold_2663 174_005_scaffold_2663
Genus: Eggerthella (50%)
6 1947 bp 61.22 5.24 83.56
NECEvent2014_4_5_scaffold_2175 174_005_scaffold_2175
Species: Eggerthella lenta (66.67%)
3 2610 bp 65.40 4.60 83.56
NECEvent2014_4_5_scaffold_3180 174_005_scaffold_3180
Species: Eggerthella lenta (100%)
2 1501 bp 63.49 4.40 83.54
NECEvent2014_4_5_scaffold_3356 174_005_scaffold_3356
Species: Eggerthella sp. HGA1 (100%)
2 1397 bp 64.14 5.58 83.54
NECEvent2014_4_5_scaffold_2382 174_005_scaffold_2382
Species: Eggerthella sp. HGA1 (66.67%)
3 2306 bp 64.53 4.94 83.52
NECEvent2014_4_5_scaffold_2829 174_005_scaffold_2829
Species: Eggerthella lenta (100%)
2 1789 bp 63.78 4.70 83.51
NECEvent2014_4_5_scaffold_3753 174_005_scaffold_3753
Species: Peptoclostridium difficile (50%)
2 1197 bp 63.49 5.64 83.46
NECEvent2014_4_5_scaffold_3060 174_005_scaffold_3060
Species: Eggerthella sp. HGA1 (50%)
2 1575 bp 66.73 4.10 83.43
NECEvent2014_4_5_scaffold_2024 174_005_scaffold_2024
Species: Eggerthella sp. HGA1 (66.67%)
3 2866 bp 61.58 5.97 83.43
NECEvent2014_4_5_scaffold_3560 174_005_scaffold_3560
Species: Eggerthella lenta (100%)
2 1291 bp 65.84 5.81 83.42
NECEvent2014_4_5_scaffold_2648 174_005_scaffold_2648
Species: Eggerthella lenta (100%)
1 1965 bp 65.75 5.04 83.36
NECEvent2014_4_5_scaffold_3364 174_005_scaffold_3364
Species: Eggerthella sp. HGA1 (66.67%)
3 1393 bp 64.39 5.17 83.35
NECEvent2014_4_5_scaffold_3272 174_005_scaffold_3272
Species: Eggerthella lenta (100%)
2 1448 bp 67.54 7.56 83.29
NECEvent2014_4_5_scaffold_3900 174_005_scaffold_3900
Species: Eggerthella sp. HGA1 (50%)
2 1132 bp 59.63 3.58 83.22
NECEvent2014_4_5_scaffold_1977 174_005_scaffold_1977
Species: Eggerthella lenta (80%)
5 2957 bp 62.83 4.46 83.19
NECEvent2014_4_5_scaffold_3281 174_005_scaffold_3281
Species: Eggerthella lenta (50%)
2 1443 bp 62.72 4.57 83.16
NECEvent2014_4_5_scaffold_2548 174_005_scaffold_2548
Species: Eggerthella lenta (60%)
5 2079 bp 64.60 4.62 83.12
NECEvent2014_4_5_scaffold_4173 174_005_scaffold_4173
Species: Eggerthella sp. HGA1 (50%)
2 1036 bp 65.35 5.50 83.11
NECEvent2014_4_5_scaffold_2520 174_005_scaffold_2520
Species: Eggerthella lenta (50%)
2 2116 bp 65.03 5.95 83.08
NECEvent2014_4_5_scaffold_2060 174_005_scaffold_2060
Species: Peptoclostridium difficile (100%)
2 2793 bp 62.51 4.51 83.03
NECEvent2014_4_5_scaffold_2807 174_005_scaffold_2807
Species: Eggerthella lenta (100%)
2 1807 bp 63.59 5.40 83.01
NECEvent2014_4_5_scaffold_2363 174_005_scaffold_2363
Species: Peptoclostridium difficile (66.67%)
3 2332 bp 64.37 4.12 82.98
NECEvent2014_4_5_scaffold_1783 174_005_scaffold_1783
Species: Eggerthella sp. HGA1 (50%)
8 3443 bp 61.34 4.62 82.95
NECEvent2014_4_5_scaffold_2407 174_005_scaffold_2407
Domain: Bacteria (50%)
4 2281 bp 62.34 5.26 82.77
NECEvent2014_4_5_scaffold_3975 174_005_scaffold_3975
Species: Eggerthella sp. HGA1 (100%)
1 1102 bp 65.52 4.36 82.76
NECEvent2014_4_5_scaffold_2016 174_005_scaffold_2016
Order: Eggerthellales (50%)
4 2885 bp 70.92 6.50 82.67
NECEvent2014_4_5_scaffold_3631 174_005_scaffold_3631
Species: Eggerthella sp. HGA1 (100%)
3 1252 bp 64.86 3.95 82.67
NECEvent2014_4_5_scaffold_1765 174_005_scaffold_1765
Species: Eggerthella lenta (100%)
4 3507 bp 66.27 5.05 82.63
NECEvent2014_4_5_scaffold_2981 174_005_scaffold_2981
Species: Eggerthella sp. HGA1 (66.67%)
3 1642 bp 63.22 6.30 82.58
NECEvent2014_4_5_scaffold_4005 174_005_scaffold_4005
Species: Eggerthella sp. HGA1 (100%)
2 1091 bp 67.19 3.85 82.49
NECEvent2014_4_5_scaffold_4075 174_005_scaffold_4075
Species: Eggerthella lenta (100%)
2 1066 bp 59.85 3.94 82.46
NECEvent2014_4_5_scaffold_2181 174_005_scaffold_2181
Species: Eggerthella lenta (80%)
5 2599 bp 62.56 5.94 82.42
NECEvent2014_4_5_scaffold_4239 174_005_scaffold_4239
Species: Eggerthella sp. YY7918 (50%)
2 1009 bp 69.57 5.80 82.36
NECEvent2014_4_5_scaffold_2206 174_005_scaffold_2206
Species: Eggerthella sp. HGA1 (100%)
3 2570 bp 63.97 5.25 82.30
NECEvent2014_4_5_scaffold_1747 174_005_scaffold_1747
Species: Eggerthella lenta (66.67%)
3 3533 bp 63.60 4.84 82.28
NECEvent2014_4_5_scaffold_3698 174_005_scaffold_3698
Species: Peptoclostridium difficile (100%)
1 1218 bp 65.76 4.68 82.27
NECEvent2014_4_5_scaffold_2754 174_005_scaffold_2754
Species: Eggerthella sp. HGA1 (66.67%)
3 1849 bp 61.17 6.17 82.26
NECEvent2014_4_5_scaffold_3125 174_005_scaffold_3125
Species: Eggerthella lenta (100%)
2 1532 bp 64.16 5.97 82.25
NECEvent2014_4_5_scaffold_2779 174_005_scaffold_2779
Species: Eggerthella lenta (50%)
4 1826 bp 64.02 5.59 82.20
NECEvent2014_4_5_scaffold_3749 174_005_scaffold_3749
Species: Eggerthella sp. HGA1 (100%)
1 1198 bp 65.61 6.01 82.14
NECEvent2014_4_5_scaffold_3096 174_005_scaffold_3096
Species: Eggerthella lenta (75%)
4 1549 bp 58.30 4.94 82.12
NECEvent2014_4_5_scaffold_1254 174_005_scaffold_1254
Species: Peptoclostridium difficile (50%)
6 5594 bp 64.43 4.53 82.11
NECEvent2014_4_5_scaffold_4041 174_005_scaffold_4041
Species: Eggerthella sp. HGA1 (100%)
2 1078 bp 66.23 4.17 82.10
NECEvent2014_4_5_scaffold_3396 174_005_scaffold_3396
Species: Peptoclostridium difficile (50%)
2 1371 bp 67.25 5.03 82.06
NECEvent2014_4_5_scaffold_2306 174_005_scaffold_2306
Species: Eggerthella sp. HGA1 (75%)
4 2400 bp 60.17 5.13 82.00
Displaying items 701-750 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.