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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 201-250 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3968 174_005_scaffold_3968
Species: Eggerthella lenta (100%)
2 1104 bp 56.61 5.71 98.91
NECEvent2014_4_5_scaffold_2490 174_005_scaffold_2490
Species: Eggerthella lenta (50%)
2 2156 bp 62.80 5.71 58.02
NECEvent2014_4_5_scaffold_2530 174_005_scaffold_2530
Species: Eggerthella sp. HGA1 (66.67%)
3 2103 bp 58.77 5.71 98.43
NECEvent2014_4_5_scaffold_2355 174_005_scaffold_2355
Species: Eggerthella lenta (100%)
3 2342 bp 67.12 5.70 93.77
NECEvent2014_4_5_scaffold_3707 174_005_scaffold_3707
Species: Peptoclostridium difficile (50%)
2 1213 bp 70.65 5.69 99.92
NECEvent2014_4_5_scaffold_2909 174_005_scaffold_2909
Species: Eggerthella lenta (50%)
2 1718 bp 60.24 5.68 73.52
NECEvent2014_4_5_scaffold_2932 174_005_scaffold_2932
Species: Eggerthella sp. HGA1 (100%)
2 1691 bp 70.08 5.68 100.06
NECEvent2014_4_5_scaffold_4189 174_005_scaffold_4189
Species: Eggerthella sp. HGA1 (100%)
2 1030 bp 64.56 5.68 100.19
NECEvent2014_4_5_scaffold_1912 174_005_scaffold_1912
Species: Gordonibacter pamelaeae (50%)
4 3117 bp 64.61 5.68 101.54
NECEvent2014_4_5_scaffold_3503 174_005_scaffold_3503
Species: Eggerthella sp. HGA1 (50%)
2 1321 bp 50.64 5.68 90.84
NECEvent2014_4_5_scaffold_2251 174_005_scaffold_2251
Species: Eggerthella lenta (66.67%)
3 2484 bp 57.09 5.68 99.52
NECEvent2014_4_5_scaffold_3044 174_005_scaffold_3044
Species: Peptoclostridium difficile (50%)
2 1585 bp 62.78 5.68 90.09
NECEvent2014_4_5_scaffold_1271 174_005_scaffold_1271
Species: Eggerthella lenta (50%)
6 5505 bp 62.51 5.67 93.79
NECEvent2014_4_5_scaffold_2816 174_005_scaffold_2816
Species: Eggerthella sp. HGA1 (50%)
2 1803 bp 64.84 5.66 90.52
NECEvent2014_4_5_scaffold_3590 174_005_scaffold_3590
Species: Eggerthella lenta (100%)
3 1272 bp 66.27 5.66 91.75
NECEvent2014_4_5_scaffold_4094 174_005_scaffold_4094
Species: Eggerthella lenta (100%)
1 1060 bp 69.81 5.66 99.91
NECEvent2014_4_5_scaffold_2096 174_005_scaffold_2096
Species: Peptoclostridium difficile (100%)
2 2733 bp 66.92 5.65 96.49
NECEvent2014_4_5_scaffold_1629 174_005_scaffold_1629
Genus: Eggerthella (60%)
5 3927 bp 66.67 5.65 86.94
NECEvent2014_4_5_scaffold_2673 174_005_scaffold_2673
Species: Enterorhabdus caecimuris (50%)
2 1938 bp 57.69 5.65 92.72
NECEvent2014_4_5_scaffold_3691 174_005_scaffold_3691
Species: Eggerthella sp. HGA1 (100%)
1 1222 bp 71.44 5.65 92.06
NECEvent2014_4_5_scaffold_3694 174_005_scaffold_3694
Genus: Eggerthella (50%)
4 1221 bp 56.51 5.65 84.52
NECEvent2014_4_5_scaffold_3252 174_005_scaffold_3252
Species: Eggerthella lenta (100%)
2 1461 bp 62.70 5.65 91.58
NECEvent2014_4_5_scaffold_4014 174_005_scaffold_4014
Species: Eggerthella sp. HGA1 (100%)
2 1088 bp 62.87 5.65 100.64
NECEvent2014_4_5_scaffold_1812 174_005_scaffold_1812
Species: Eggerthella lenta (100%)
1 3380 bp 66.78 5.64 99.94
NECEvent2014_4_5_scaffold_3864 174_005_scaffold_3864
Species: Eggerthella lenta (100%)
2 1144 bp 61.01 5.64 89.69
NECEvent2014_4_5_scaffold_2926 174_005_scaffold_2926
Species: Eggerthella sp. HGA1 (100%)
1 1703 bp 63.89 5.64 89.84
NECEvent2014_4_5_scaffold_3753 174_005_scaffold_3753
Species: Peptoclostridium difficile (50%)
2 1197 bp 63.49 5.64 83.46
NECEvent2014_4_5_scaffold_2350 174_005_scaffold_2350
Species: Eggerthella lenta (50%)
4 2346 bp 57.89 5.63 85.00
NECEvent2014_4_5_scaffold_1699 174_005_scaffold_1699
Species: Eggerthella sp. HGA1 (50%)
2 3733 bp 67.16 5.63 99.33
NECEvent2014_4_5_scaffold_1809 174_005_scaffold_1809
Species: Eggerthella sp. HGA1 (50%)
2 3392 bp 63.62 5.62 89.06
NECEvent2014_4_5_scaffold_2120 174_005_scaffold_2120
Species: Eggerthella lenta (50%)
4 2695 bp 55.21 5.62 78.40
NECEvent2014_4_5_scaffold_2637 174_005_scaffold_2637
Species: Eggerthella sp. HGA1 (50%)
2 1974 bp 70.11 5.62 94.38
NECEvent2014_4_5_scaffold_3739 174_005_scaffold_3739
Species: Eggerthella lenta (50%)
2 1202 bp 63.48 5.62 72.13
NECEvent2014_4_5_scaffold_4153 174_005_scaffold_4153
Species: Eggerthella lenta (100%)
2 1042 bp 67.37 5.61 100.19
NECEvent2014_4_5_scaffold_1644 174_005_scaffold_1644
Species: Eggerthella lenta (60%)
5 3877 bp 66.29 5.61 91.39
NECEvent2014_4_5_scaffold_3682 174_005_scaffold_3682
Species: Eggerthella lenta (100%)
2 1231 bp 69.78 5.61 94.80
NECEvent2014_4_5_scaffold_1706 174_005_scaffold_1706
Species: Eggerthella sp. HGA1 (50%)
4 3717 bp 60.64 5.61 92.57
NECEvent2014_4_5_scaffold_3922 174_005_scaffold_3922
Species: Eggerthella lenta (100%)
2 1126 bp 67.76 5.60 100.18
NECEvent2014_4_5_scaffold_3316 174_005_scaffold_3316
Species: Eggerthella lenta (100%)
2 1422 bp 63.08 5.59 100.00
NECEvent2014_4_5_scaffold_2779 174_005_scaffold_2779
Species: Eggerthella lenta (50%)
4 1826 bp 64.02 5.59 82.20
NECEvent2014_4_5_scaffold_2539 174_005_scaffold_2539
Species: Eggerthella sp. HGA1 (66.67%)
3 2094 bp 63.99 5.59 68.34
NECEvent2014_4_5_scaffold_2819 174_005_scaffold_2819
Species: Peptoclostridium difficile (50%)
2 1801 bp 68.18 5.58 86.95
NECEvent2014_4_5_scaffold_2572 174_005_scaffold_2572
Order: Eggerthellales (100%)
3 2044 bp 54.89 5.58 98.04
NECEvent2014_4_5_scaffold_3356 174_005_scaffold_3356
Species: Eggerthella sp. HGA1 (100%)
2 1397 bp 64.14 5.58 83.54
NECEvent2014_4_5_scaffold_3666 174_005_scaffold_3666
Species: Eggerthella sp. HGA1 (100%)
2 1237 bp 61.92 5.58 62.57
NECEvent2014_4_5_scaffold_3777 174_005_scaffold_3777
Species: Eggerthella sp. HGA1 (50%)
2 1183 bp 67.46 5.58 98.90
NECEvent2014_4_5_scaffold_3905 174_005_scaffold_3905
Species: Eggerthella sp. HGA1 (66.67%)
3 1131 bp 65.96 5.57 80.37
NECEvent2014_4_5_scaffold_2133 174_005_scaffold_2133
Species: Eggerthella lenta (66.67%)
3 2668 bp 52.96 5.57 74.89
NECEvent2014_4_5_scaffold_2496 174_005_scaffold_2496
Species: Eggerthella lenta (100%)
2 2153 bp 63.07 5.57 88.90
NECEvent2014_4_5_scaffold_2977 174_005_scaffold_2977
Species: Eggerthella lenta (66.67%)
3 1645 bp 67.29 5.56 92.83
Displaying items 201-250 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.