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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 151-200 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3854 174_005_scaffold_3854
Species: Peptoclostridium difficile (100%)
1 1147 bp 69.49 5.88 99.91
NECEvent2014_4_5_scaffold_4210 174_005_scaffold_4210
Species: Eggerthella lenta (66.67%)
3 1020 bp 63.14 5.88 72.06
NECEvent2014_4_5_scaffold_2668 174_005_scaffold_2668
Species: Eggerthella lenta (100%)
2 1943 bp 57.80 5.87 97.12
NECEvent2014_4_5_scaffold_2012 174_005_scaffold_2012
Genus: Eggerthella (66.67%)
3 2889 bp 58.98 5.87 79.54
NECEvent2014_4_5_scaffold_2108 174_005_scaffold_2108
Species: Eggerthella sp. HGA1 (100%)
3 2714 bp 64.63 5.86 86.00
NECEvent2014_4_5_scaffold_3122 174_005_scaffold_3122
Species: Peptoclostridium difficile (50%)
2 1535 bp 64.10 5.86 88.34
NECEvent2014_4_5_scaffold_2705 174_005_scaffold_2705
Species: Eggerthella sp. HGA1 (50%)
2 1897 bp 58.88 5.85 79.23
NECEvent2014_4_5_scaffold_3619 174_005_scaffold_3619
Species: Eggerthella sp. HGA1 (100%)
1 1258 bp 64.55 5.84 83.94
NECEvent2014_4_5_scaffold_3112 174_005_scaffold_3112
Species: Eggerthella sp. HGA1 (66.67%)
3 1542 bp 64.85 5.84 96.11
NECEvent2014_4_5_scaffold_3367 174_005_scaffold_3367
Species: Eggerthella lenta (50%)
2 1389 bp 57.88 5.83 99.57
NECEvent2014_4_5_scaffold_2422 174_005_scaffold_2422
Species: Eggerthella lenta (100%)
2 2263 bp 64.34 5.83 96.51
NECEvent2014_4_5_scaffold_3521 174_005_scaffold_3521
Species: Collinsella aerofaciens (100%)
2 1313 bp 69.54 5.83 99.16
NECEvent2014_4_5_scaffold_2601 174_005_scaffold_2601
Species: Eggerthella sp. HGA1 (50%)
2 2012 bp 65.11 5.82 83.80
NECEvent2014_4_5_scaffold_3560 174_005_scaffold_3560
Species: Eggerthella lenta (100%)
2 1291 bp 65.84 5.81 83.42
NECEvent2014_4_5_scaffold_2810 174_005_scaffold_2810
Species: Gordonibacter pamelaeae (100%)
4 1807 bp 54.79 5.81 68.73
NECEvent2014_4_5_scaffold_3606 174_005_scaffold_3606
Species: Eggerthella lenta (100%)
1 1264 bp 66.38 5.81 99.68
NECEvent2014_4_5_scaffold_3450 174_005_scaffold_3450
Species: Eggerthella sp. HGA1 (100%)
2 1343 bp 63.22 5.81 95.61
NECEvent2014_4_5_scaffold_3511 174_005_scaffold_3511
Species: Eggerthella sp. HGA1 (100%)
1 1317 bp 65.98 5.81 76.77
NECEvent2014_4_5_scaffold_4239 174_005_scaffold_4239
Species: Eggerthella sp. YY7918 (50%)
2 1009 bp 69.57 5.80 82.36
NECEvent2014_4_5_scaffold_2994 174_005_scaffold_2994
Species: Collinsella aerofaciens (50%)
2 1629 bp 61.39 5.80 65.75
NECEvent2014_4_5_scaffold_4089 174_005_scaffold_4089
Species: Eggerthella lenta (66.67%)
3 1062 bp 67.98 5.79 95.48
NECEvent2014_4_5_scaffold_3941 174_005_scaffold_3941
Species: Eggerthella sp. HGA1 (66.67%)
3 1114 bp 64.00 5.79 99.10
NECEvent2014_4_5_scaffold_4238 174_005_scaffold_4238
Species: Slackia piriformis (66.67%)
3 1010 bp 61.58 5.79 94.16
NECEvent2014_4_5_scaffold_3502 174_005_scaffold_3502
Species: Eggerthella lenta (100%)
1 1321 bp 66.16 5.79 99.92
NECEvent2014_4_5_scaffold_2554 174_005_scaffold_2554
Species: Eggerthella sp. HGA1 (66.67%)
3 2076 bp 68.06 5.78 94.36
NECEvent2014_4_5_scaffold_3872 174_005_scaffold_3872
Species: Eggerthella sp. HGA1 (50%)
2 1142 bp 72.42 5.78 99.30
NECEvent2014_4_5_scaffold_2613 174_005_scaffold_2613
Species: Eggerthella sp. HGA1 (100%)
1 1998 bp 65.47 5.78 70.57
NECEvent2014_4_5_scaffold_2373 174_005_scaffold_2373
Species: Eggerthella sp. HGA1 (100%)
1 2311 bp 65.51 5.78 99.96
NECEvent2014_4_5_scaffold_2912 174_005_scaffold_2912
Species: Eggerthella sp. HGA1 (50%)
2 1714 bp 66.63 5.78 91.72
NECEvent2014_4_5_scaffold_2456 174_005_scaffold_2456
Species: Peptoclostridium difficile (66.67%)
3 2206 bp 62.28 5.78 88.67
NECEvent2014_4_5_scaffold_2532 174_005_scaffold_2532
Species: Eggerthella lenta (100%)
2 2102 bp 68.36 5.78 94.20
NECEvent2014_4_5_scaffold_2789 174_005_scaffold_2789
Species: Peptoclostridium difficile (100%)
4 1818 bp 64.14 5.78 88.28
NECEvent2014_4_5_scaffold_3635 174_005_scaffold_3635
Species: Eggerthella lenta (50%)
2 1251 bp 65.55 5.76 92.57
NECEvent2014_4_5_scaffold_3638 174_005_scaffold_3638
Species: Eggerthella lenta (100%)
2 1251 bp 62.19 5.76 92.33
NECEvent2014_4_5_scaffold_2419 174_005_scaffold_2419
Species: Eggerthella sp. HGA1 (100%)
2 2265 bp 64.42 5.76 88.48
NECEvent2014_4_5_scaffold_2980 174_005_scaffold_2980
Species: Eggerthella lenta (100%)
1 1642 bp 62.24 5.76 99.76
NECEvent2014_4_5_scaffold_3077 174_005_scaffold_3077
Species: Eggerthella sp. HGA1 (80%)
5 1564 bp 58.82 5.75 90.54
NECEvent2014_4_5_scaffold_3150 174_005_scaffold_3150
Species: Eggerthella sp. HGA1 (50%)
2 1514 bp 64.86 5.75 76.88
NECEvent2014_4_5_scaffold_3155 174_005_scaffold_3155
Species: Eggerthella sp. HGA1 (100%)
3 1513 bp 58.89 5.75 40.85
NECEvent2014_4_5_scaffold_2466 174_005_scaffold_2466
Species: Collinsella aerofaciens (66.67%)
3 2192 bp 69.39 5.75 100.73
NECEvent2014_4_5_scaffold_2290 174_005_scaffold_2290
Species: Eggerthella sp. HGA1 (66.67%)
3 2426 bp 63.52 5.75 85.82
NECEvent2014_4_5_scaffold_1560 174_005_scaffold_1560
Species: Eggerthella sp. HGA1 (66.67%)
6 4157 bp 61.85 5.74 87.39
NECEvent2014_4_5_scaffold_2500 174_005_scaffold_2500
Species: Eggerthella sp. HGA1 (66.67%)
3 2143 bp 64.12 5.74 80.35
NECEvent2014_4_5_scaffold_2626 174_005_scaffold_2626
Species: Peptoclostridium difficile (66.67%)
3 1990 bp 67.34 5.73 99.65
NECEvent2014_4_5_scaffold_2949 174_005_scaffold_2949
Species: Eggerthella lenta (100%)
2 1675 bp 64.30 5.73 89.01
NECEvent2014_4_5_scaffold_3979 174_005_scaffold_3979
Species: Eggerthella sp. HGA1 (100%)
1 1100 bp 66.18 5.73 61.36
NECEvent2014_4_5_scaffold_3143 174_005_scaffold_3143
Species: Eggerthella sp. HGA1 (100%)
2 1520 bp 67.11 5.72 100.07
NECEvent2014_4_5_scaffold_3978 174_005_scaffold_3978
Species: Eggerthella lenta (100%)
2 1101 bp 58.95 5.72 99.73
NECEvent2014_4_5_scaffold_1497 174_005_scaffold_1497
Species: Eggerthella lenta (50%)
6 4406 bp 60.55 5.72 87.04
NECEvent2014_4_5_scaffold_3614 174_005_scaffold_3614
Species: Eggerthella sp. HGA1 (50%)
2 1260 bp 71.43 5.71 100.24
Displaying items 151-200 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.