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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 101-150 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_2754 174_005_scaffold_2754
Species: Eggerthella sp. HGA1 (66.67%)
3 1849 bp 61.17 6.17 82.26
NECEvent2014_4_5_scaffold_2502 174_005_scaffold_2502
Species: Eggerthella sp. HGA1 (100%)
2 2140 bp 61.45 6.17 86.36
NECEvent2014_4_5_scaffold_3522 174_005_scaffold_3522
Species: Eggerthella sp. HGA1 (66.67%)
3 1313 bp 66.64 6.17 84.77
NECEvent2014_4_5_scaffold_3204 174_005_scaffold_3204
Species: Eggerthella lenta (66.67%)
3 1490 bp 68.39 6.14 89.40
NECEvent2014_4_5_scaffold_3500 174_005_scaffold_3500
Species: Eggerthella sp. HGA1 (100%)
1 1321 bp 66.16 6.13 99.24
NECEvent2014_4_5_scaffold_3918 174_005_scaffold_3918
Species: Eggerthella sp. HGA1 (100%)
1 1127 bp 60.51 6.12 62.29
NECEvent2014_4_5_scaffold_2292 174_005_scaffold_2292
Species: Actinomyces turicensis (66.67%)
3 2425 bp 70.93 6.12 89.44
NECEvent2014_4_5_scaffold_4248 174_005_scaffold_4248
Species: Eggerthella sp. HGA1 (100%)
2 1007 bp 72.29 6.11 99.80
NECEvent2014_4_5_scaffold_3177 174_005_scaffold_3177
Species: Eggerthella sp. HGA1 (50%)
2 1501 bp 64.62 6.10 99.93
NECEvent2014_4_5_scaffold_3482 174_005_scaffold_3482
Species: Eggerthella sp. HGA1 (50%)
2 1328 bp 65.51 6.10 30.72
NECEvent2014_4_5_scaffold_2253 174_005_scaffold_2253
Species: Eggerthella sp. HGA1 (66.67%)
3 2482 bp 65.07 6.10 78.57
NECEvent2014_4_5_scaffold_3680 174_005_scaffold_3680
Species: Eggerthella lenta (50%)
2 1231 bp 69.70 6.09 77.99
NECEvent2014_4_5_scaffold_2683 174_005_scaffold_2683
Species: Eggerthella sp. HGA1 (100%)
2 1921 bp 65.28 6.09 97.45
NECEvent2014_4_5_scaffold_3221 174_005_scaffold_3221
Species: Peptoclostridium difficile (50%)
2 1479 bp 65.92 6.09 72.41
NECEvent2014_4_5_scaffold_2308 174_005_scaffold_2308
Species: Eggerthella lenta (66.67%)
3 2394 bp 54.51 6.08 97.87
NECEvent2014_4_5_scaffold_2352 174_005_scaffold_2352
Species: Eggerthella sp. HGA1 (50%)
2 2345 bp 64.31 6.08 87.25
NECEvent2014_4_5_scaffold_1390 174_005_scaffold_1390
Species: Eggerthella lenta (50%)
4 4859 bp 61.47 6.08 93.91
NECEvent2014_4_5_scaffold_3297 174_005_scaffold_3297
Species: Eggerthella lenta (100%)
1 1432 bp 66.06 6.08 99.72
NECEvent2014_4_5_scaffold_3575 174_005_scaffold_3575
Species: Peptoclostridium difficile (100%)
1 1284 bp 63.71 6.07 77.10
NECEvent2014_4_5_scaffold_3337 174_005_scaffold_3337
Species: Eggerthella sp. HGA1 (100%)
2 1408 bp 62.07 6.07 97.80
NECEvent2014_4_5_scaffold_3336 174_005_scaffold_3336
Species: Eggerthella lenta (100%)
2 1410 bp 60.21 6.06 98.94
NECEvent2014_4_5_scaffold_2678 174_005_scaffold_2678
Species: Eggerthella lenta (66.67%)
3 1931 bp 65.56 6.06 98.81
NECEvent2014_4_5_scaffold_3766 174_005_scaffold_3766
Species: Eggerthella sp. HGA1 (100%)
2 1190 bp 63.70 6.05 87.23
NECEvent2014_4_5_scaffold_2936 174_005_scaffold_2936
Species: Eggerthella lenta (50%)
2 1689 bp 64.42 6.04 91.65
NECEvent2014_4_5_scaffold_3323 174_005_scaffold_3323
Species: Eggerthella lenta (66.67%)
3 1418 bp 71.72 6.03 97.11
NECEvent2014_4_5_scaffold_3036 174_005_scaffold_3036
Species: Eggerthella sp. HGA1 (100%)
1 1591 bp 64.42 6.03 99.94
NECEvent2014_4_5_scaffold_3553 174_005_scaffold_3553
Species: Coriobacteriaceae bacterium 68-1-3 (50%)
2 1294 bp 56.34 6.03 102.47
NECEvent2014_4_5_scaffold_2210 174_005_scaffold_2210
Species: Eggerthella sp. HGA1 (50%)
4 2565 bp 62.50 6.02 83.63
NECEvent2014_4_5_scaffold_2682 174_005_scaffold_2682
Species: Eggerthella lenta (66.67%)
3 1921 bp 65.02 6.01 94.17
NECEvent2014_4_5_scaffold_3749 174_005_scaffold_3749
Species: Eggerthella sp. HGA1 (100%)
1 1198 bp 65.61 6.01 82.14
NECEvent2014_4_5_scaffold_2818 174_005_scaffold_2818
Species: Eggerthella sp. HGA1 (100%)
2 1801 bp 60.58 6.00 89.12
NECEvent2014_4_5_scaffold_3628 174_005_scaffold_3628
Domain: Bacteria (66.67%)
3 1253 bp 69.59 5.99 96.97
NECEvent2014_4_5_scaffold_3305 174_005_scaffold_3305
Species: Eggerthella lenta (50%)
2 1429 bp 66.62 5.98 63.40
NECEvent2014_4_5_scaffold_3967 174_005_scaffold_3967
Species: Eggerthella lenta (50%)
2 1104 bp 68.48 5.98 86.96
NECEvent2014_4_5_scaffold_3536 174_005_scaffold_3536
Species: Eggerthella lenta (100%)
1 1305 bp 63.91 5.98 99.77
NECEvent2014_4_5_scaffold_3125 174_005_scaffold_3125
Species: Eggerthella lenta (100%)
2 1532 bp 64.16 5.97 82.25
NECEvent2014_4_5_scaffold_2398 174_005_scaffold_2398
Species: Eggerthella sp. HGA1 (75%)
4 2285 bp 62.58 5.97 93.61
NECEvent2014_4_5_scaffold_1942 174_005_scaffold_1942
Species: Peptoclostridium difficile (66.67%)
3 3042 bp 64.17 5.97 99.70
NECEvent2014_4_5_scaffold_2024 174_005_scaffold_2024
Species: Eggerthella sp. HGA1 (66.67%)
3 2866 bp 61.58 5.97 83.43
NECEvent2014_4_5_scaffold_2594 174_005_scaffold_2594
Species: Eggerthella lenta (66.67%)
3 2015 bp 66.60 5.96 84.12
NECEvent2014_4_5_scaffold_2520 174_005_scaffold_2520
Species: Eggerthella lenta (50%)
2 2116 bp 65.03 5.95 83.08
NECEvent2014_4_5_scaffold_4097 174_005_scaffold_4097
Species: Eggerthella lenta (50%)
2 1060 bp 69.25 5.94 101.32
NECEvent2014_4_5_scaffold_2181 174_005_scaffold_2181
Species: Eggerthella lenta (80%)
5 2599 bp 62.56 5.94 82.42
NECEvent2014_4_5_scaffold_3207 174_005_scaffold_3207
Genus: Eggerthella (50%)
4 1489 bp 61.11 5.94 74.88
NECEvent2014_4_5_scaffold_3404 174_005_scaffold_3404
Species: Eggerthella sp. HGA1 (100%)
3 1367 bp 62.77 5.93 95.90
NECEvent2014_4_5_scaffold_4226 174_005_scaffold_4226
Species: Eggerthella lenta (100%)
1 1013 bp 68.31 5.92 99.80
NECEvent2014_4_5_scaffold_3507 174_005_scaffold_3507
Species: Eggerthella sp. HGA1 (66.67%)
3 1318 bp 69.27 5.92 96.74
NECEvent2014_4_5_scaffold_2505 174_005_scaffold_2505
Species: Eggerthella lenta (100%)
2 2132 bp 67.87 5.91 99.62
NECEvent2014_4_5_scaffold_1726 174_005_scaffold_1726
Species: Eggerthella sp. HGA1 (66.67%)
3 3633 bp 64.22 5.90 88.44
NECEvent2014_4_5_scaffold_2307 174_005_scaffold_2307
Species: Peptoclostridium difficile (100%)
4 2397 bp 64.29 5.88 74.34
Displaying items 101-150 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.