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NECEvent2014_4_5_scaffold_161

Alias: 174_005_scaffold_161

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_5_scaffold_161_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(117..1706)
DNA (1590bp) protein (530aa)
Methionine--tRNA ligase {ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|SAAS:SAAS00001323};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
metG2; methionine--tRNA ligase MetG (EC:6.1.1.10)
Methionine-tRNA ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q1M9_9CLOT rbh
Suspect SCG annotation. See neighboring gene [NECEvent2014_4_5_scaffold_161_2].
NECEvent2014_4_5_scaffold_161_2
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1899..3842)
DNA (1944bp) protein (648aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CBA2_9CLOT rbh
methionyl-tRNA synthetase
NECEvent2014_4_5_scaffold_161_3
Brochothrix campestris, Brochothrix, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4683..5528)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Enterococcus sulfureus ATCC 49903 RepID=S0NYL8_9ENTE
Cof hydrolase {ECO:0000313|EMBL:EUJ34883.1}; TaxID=1265861 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Brochothrix.;" source="Brochothrix campestris FSL F6-1037.;"
cof-like hydrolase
NECEvent2014_4_5_scaffold_161_4
Vagococcus lutrae, Vagococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5546..7015)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Vagococcus lutrae LBD1 RepID=V6QE26_9ENTE rbh
Uncharacterized protein {ECO:0000313|EMBL:EST90838.1}; TaxID=1408226 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus.;" source="Vagococcus lutrae LBD1.;"
6-phospho-beta-glucosidase
NECEvent2014_4_5_scaffold_161_5
Carnobacterium maltaromaticum, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7037..8902)
DNA (1866bp) protein (622aa)
bglP; PTS system, beta-glucoside-specific IIABC component family protein (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component family protein {ECO:0000313|EMBL:CCO10440.2}; EC=2.7.1.69 {ECO:0000313|EMBL:CCO10440.2};; TaxID=1234679 species="Bacteria; Firmicutes; Bacilli; Lact
PTS system, beta-glucoside-specific IIABC component family protein n=1 Tax=Carnobacterium maltaromaticum LMA28 RepID=K8E2Y5_CARML rbh
NECEvent2014_4_5_scaffold_161_6
Enterococcus caccae, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9065..9862)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Enterococcus caccae ATCC BAA-1240 RepID=R3WPH1_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOL49322.1}; TaxID=1158612 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus caccae ATCC BAA-1240
RpiR family transcriptional regulator
NECEvent2014_4_5_scaffold_161_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10046..10384)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8W5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99409.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_4_5_scaffold_161_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10532..11011
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4J5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99408.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_4_5_scaffold_161_9
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11043..11543
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H553_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99407.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_4_5_scaffold_161_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11597..13363)
DNA (1767bp) protein (589aa)
Xaa-Pro aminopeptidase 1 (EC:3.4.11.9)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGW9_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH99406.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_4_5_scaffold_161_11
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13561..13812)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FJ60_9CLOT
sortase B
Uncharacterized protein {ECO:0000313|EMBL:CDG00714.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
NECEvent2014_4_5_scaffold_161_12
unknown

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comp(13922..14344)
DNA (423bp) protein (141aa)

This feature has no annotations

NECEvent2014_4_5_scaffold_161_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14586..16310)
DNA (1725bp) protein (575aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8W4_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH99404.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
na+/H+ antiporter family protein
NECEvent2014_4_5_scaffold_161_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16984..19998)
DNA (3015bp) protein (1005aa)
UPI0003D5A423 related cluster n=1 Tax=unknown RepID=UPI0003D5A423 rbh
NB-ARC protein {ECO:0000313|EMBL:ETI93870.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_
NB-ARC domain./Protein kinase domain.
NECEvent2014_4_5_scaffold_161_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20122..21315
DNA (1194bp) protein (398aa)
UPI0003D683AF related cluster n=1 Tax=unknown RepID=UPI0003D683AF
Uncharacterized protein {ECO:0000313|EMBL:ETI93869.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlet
NECEvent2014_4_5_scaffold_161_16
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21344..21478)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Acinetobacter baumannii NIPH 67 RepID=N9J300_ACIBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENW50710.1}; TaxID=1217627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/
NECEvent2014_4_5_scaffold_161_17
unknown

Not on your lists

comp(21514..21759)
DNA (246bp) protein (82aa)

This feature has no annotations

NECEvent2014_4_5_scaffold_161_18
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21872..22228)
DNA (357bp) protein (119aa)
Transcriptional modulator of MazE/toxin MazF n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BSB5_9CLOT
Transcriptional modulator of MazE/toxin MazF {ECO:0000313|EMBL:EOR19958.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
transcriptional modulator of MazE/toxin MazF
NECEvent2014_4_5_scaffold_161_19
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22724..23608
DNA (885bp) protein (295aa)
arb; 6-phospho-beta-glucosidase (EC:3.2.1.86)
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEI58125.1}; EC=3.2.1.86 {ECO:0000313|EMBL:EEI58125.1};; TaxID=491075 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococ
6-phospho-beta-glucosidase n=105 Tax=Enterococcus RepID=Q839A6_ENTFA
NECEvent2014_4_5_scaffold_161_20
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23749..24330)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NS43_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM68921.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_4_5_scaffold_161_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24515..27187
DNA (2673bp) protein (891aa)
YhgE/Pip domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDZ8_9FIRM rbh
YhgE/Pip domain protein {ECO:0000313|EMBL:ERJ97513.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
NECEvent2014_4_5_scaffold_161_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27315..28358)
DNA (1044bp) protein (348aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=883064 species="Bacteria; Firmicutes; Clost
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Clostridium perfringens F262 RepID=H7CW24_CLOPF
NECEvent2014_4_5_scaffold_161_23
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28543..29718
DNA (1176bp) protein (392aa)
Galactokinase {ECO:0000255|HAMAP-Rule:MF_00246}; EC=2.7.1.6 {ECO:0000255|HAMAP-Rule:MF_00246};; Galactose kinase {ECO:0000255|HAMAP-Rule:MF_00246}; TaxID=290402 species="Bacteria; Firmicutes; Clostrid
Galactokinase n=2 Tax=Clostridium RepID=GAL1_CLOB8
galactokinase
NECEvent2014_4_5_scaffold_161_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29744..30769
DNA (1026bp) protein (342aa)
Catabolite control protein A n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMV4_CLOSA
ccpA; catabolite control protein A
Catabolite control protein A {ECO:0000313|EMBL:AGX41863.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum
NECEvent2014_4_5_scaffold_161_25
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(30958..32904)
DNA (1947bp) protein (649aa)
NADH oxidase n=1 Tax=Blautia producta RepID=UPI00036E365C rbh
NADH oxidase {ECO:0000313|EMBL:KGJ51147.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.
NADH:flavin oxidoreductases, Old Yellow Enzyme family
NECEvent2014_4_5_scaffold_161_26
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(33085..34152)
DNA (1068bp) protein (356aa)
Transcriptional regulator, AraC family n=5 Tax=Firmicutes RepID=E4LXY4_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDC85506.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipel
transcriptional regulator
NECEvent2014_4_5_scaffold_161_27
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34298..35206)
DNA (909bp) protein (303aa)
LysR substrate binding domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QJT6_9CLOT rbh
LysR substrate binding domain protein {ECO:0000313|EMBL:EKY28211.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum D
HTH-type transcriptional regulator gltC
Displaying 27 items

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