ggKbase home page

NECEvent2014_4_5_Clostridium_7_2_43FAA-rel_28_9

NECEvent2014_4_5_Clostridium_29_9
In projects: NECEvent2014_4_5

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 201-250 of 473 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_1538 174_005_scaffold_1538
Genus: Clostridium (100%)
5 4236 bp 24.93 8.71 94.55
NECEvent2014_4_5_scaffold_1040 174_005_scaffold_1040
Genus: Clostridium (55.56%)
9 7256 bp 25.83 8.72 70.95
NECEvent2014_4_5_scaffold_2439 174_005_scaffold_2439
Species: [Clostridium] termitidis (50%)
2 2236 bp 26.57 8.72 64.94
NECEvent2014_4_5_scaffold_2564 174_005_scaffold_2564
Genus: Clostridium (50%)
4 2061 bp 25.72 8.73 74.24
NECEvent2014_4_5_scaffold_685 174_005_scaffold_685
Species: Clostridium sp. 7_2_43FAA (70%)
10 11513 bp 30.63 8.74 93.16
NECEvent2014_4_5_scaffold_997 174_005_scaffold_997
Genus: Clostridium (100%)
7 7703 bp 30.21 8.74 86.58
NECEvent2014_4_5_scaffold_2410 174_005_scaffold_2410
Species: Clostridium sp. 7_2_43FAA (100%)
2 2277 bp 26.00 8.76 66.80
NECEvent2014_4_5_scaffold_2050 174_005_scaffold_2050
Genus: Clostridium (66.67%)
3 2803 bp 27.97 8.78 87.23
NECEvent2014_4_5_scaffold_2150 174_005_scaffold_2150
Species: Clostridium sp. 7_2_43FAA (66.67%)
3 2649 bp 29.37 8.78 73.73
NECEvent2014_4_5_scaffold_1164 174_005_scaffold_1164
Species: Clostridium sp. 7_2_43FAA (50%)
6 6114 bp 29.52 8.78 78.21
NECEvent2014_4_5_scaffold_1100 174_005_scaffold_1100
Species: Clostridium sp. 7_2_43FAA (85.71%)
7 6670 bp 27.93 8.79 82.67
NECEvent2014_4_5_scaffold_551 174_005_scaffold_551
Species: Clostridium sp. 7_2_43FAA (87.5%)
8 13994 bp 27.00 8.81 86.99
NECEvent2014_4_5_scaffold_2221 174_005_scaffold_2221
Species: Clostridium baratii (100%)
1 2550 bp 27.41 8.82 93.41
NECEvent2014_4_5_scaffold_2009 174_005_scaffold_2009
Species: Clostridium sartagoforme (100%)
3 2892 bp 29.84 8.82 96.27
NECEvent2014_4_5_scaffold_598 174_005_scaffold_598
Species: Clostridium sp. 7_2_43FAA (71.43%)
14 13134 bp 28.77 8.84 82.78
NECEvent2014_4_5_scaffold_3491 174_005_scaffold_3491
Species: Clostridium sartagoforme (100%)
1 1324 bp 30.29 8.84 82.25
NECEvent2014_4_5_scaffold_2058 174_005_scaffold_2058
Genus: Clostridium (100%)
5 2797 bp 27.49 8.85 86.45
NECEvent2014_4_5_scaffold_217 174_005_scaffold_217
Genus: Clostridium (78.26%)
23 30243 bp 27.57 8.85 89.00
NECEvent2014_4_5_scaffold_1293 174_005_scaffold_1293
Species: Clostridium sartagoforme (60%)
5 5371 bp 28.47 8.88 93.28
NECEvent2014_4_5_scaffold_821 174_005_scaffold_821
Genus: Clostridium (61.54%)
13 9674 bp 27.19 8.88 77.65
NECEvent2014_4_5_scaffold_692 174_005_scaffold_692
Species: Clostridium sp. 7_2_43FAA (50%)
12 11391 bp 29.73 8.88 88.46
NECEvent2014_4_5_scaffold_455 174_005_scaffold_455
Genus: Clostridium (64.29%)
14 16569 bp 28.34 8.88 92.78
NECEvent2014_4_5_scaffold_1682 174_005_scaffold_1682
Species: Clostridium sartagoforme (60%)
5 3779 bp 27.20 8.89 96.93
NECEvent2014_4_5_scaffold_568 174_005_scaffold_568
Species: Clostridium sp. 7_2_43FAA (72.73%)
11 13588 bp 29.63 8.90 90.45
NECEvent2014_4_5_scaffold_1099 174_005_scaffold_1099
Genus: Clostridium (71.43%)
7 6691 bp 27.14 8.90 88.69
NECEvent2014_4_5_scaffold_1696 174_005_scaffold_1696
Species: Clostridium sartagoforme (100%)
4 3740 bp 26.76 8.90 91.36
NECEvent2014_4_5_scaffold_1014 174_005_scaffold_1014
Genus: Clostridium (100%)
5 7535 bp 27.64 8.92 88.31
NECEvent2014_4_5_scaffold_761 174_005_scaffold_761
Genus: Clostridium (66.67%)
9 10543 bp 29.00 8.92 84.06
NECEvent2014_4_5_scaffold_315 174_005_scaffold_315
Genus: Clostridium (80.95%)
21 22408 bp 28.01 8.92 87.09
NECEvent2014_4_5_scaffold_2272 174_005_scaffold_2272
Species: Clostridium sp. 7_2_43FAA (50%)
4 2455 bp 25.25 8.92 64.15
NECEvent2014_4_5_scaffold_912 174_005_scaffold_912
Genus: Clostridium (54.55%)
11 8565 bp 27.06 8.93 77.79
NECEvent2014_4_5_scaffold_1395 174_005_scaffold_1395
Species: Clostridium sartagoforme (100%)
4 4831 bp 29.68 8.94 92.09
NECEvent2014_4_5_scaffold_1922 174_005_scaffold_1922
Species: Clostridium sp. 7_2_43FAA (50%)
2 3098 bp 30.54 8.96 86.09
NECEvent2014_4_5_scaffold_655 174_005_scaffold_655
Species: Clostridium sp. 7_2_43FAA (63.64%)
11 12064 bp 28.77 8.96 78.88
NECEvent2014_4_5_scaffold_194 174_005_scaffold_194
Genus: Clostridium (83.87%)
31 32232 bp 28.51 8.96 81.66
NECEvent2014_4_5_scaffold_1541 174_005_scaffold_1541
Species: Clostridium sp. 7_2_43FAA (80%)
5 4225 bp 27.62 8.98 88.26
NECEvent2014_4_5_scaffold_2495 174_005_scaffold_2495
Species: Clostridium sp. 7_2_43FAA (50%)
4 2154 bp 25.44 8.98 83.57
NECEvent2014_4_5_scaffold_1234 174_005_scaffold_1234
Genus: Clostridium (100%)
4 5694 bp 29.14 9.01 83.19
NECEvent2014_4_5_scaffold_1005 174_005_scaffold_1005
Species: Clostridium sartagoforme (55.56%)
9 7594 bp 27.81 9.01 81.50
NECEvent2014_4_5_scaffold_1224 174_005_scaffold_1224
Species: Clostridium celatum (60%)
5 5757 bp 30.17 9.02 83.38
NECEvent2014_4_5_scaffold_754 174_005_scaffold_754
Species: Clostridium sp. 7_2_43FAA (100%)
10 10580 bp 28.49 9.02 94.08
NECEvent2014_4_5_scaffold_1073 174_005_scaffold_1073
Species: Clostridium sp. 7_2_43FAA (80%)
5 6947 bp 29.52 9.03 77.04
NECEvent2014_4_5_scaffold_813 174_005_scaffold_813
Species: Clostridium sp. 7_2_43FAA (58.33%)
12 9780 bp 28.33 9.05 82.94
NECEvent2014_4_5_scaffold_710 174_005_scaffold_710
Species: Clostridium sp. 7_2_43FAA (70%)
10 11133 bp 28.16 9.05 87.28
NECEvent2014_4_5_scaffold_1618 174_005_scaffold_1618
Species: Clostridium sartagoforme (60%)
5 3955 bp 29.63 9.06 99.22
NECEvent2014_4_5_scaffold_1887 174_005_scaffold_1887
Species: Clostridium sp. 7_2_43FAA (50%)
4 3192 bp 29.57 9.07 77.44
NECEvent2014_4_5_scaffold_1022 174_005_scaffold_1022
Species: Clostridium sartagoforme (60%)
5 7436 bp 28.01 9.08 92.87
NECEvent2014_4_5_scaffold_1142 174_005_scaffold_1142
Species: Clostridium sartagoforme (71.43%)
7 6277 bp 28.41 9.08 81.73
NECEvent2014_4_5_scaffold_1919 174_005_scaffold_1919
Species: Clostridium sp. 7_2_43FAA (50%)
4 3102 bp 31.72 9.09 77.37
NECEvent2014_4_5_scaffold_1647 174_005_scaffold_1647
Species: Clostridium sp. 7_2_43FAA (66.67%)
3 3872 bp 28.87 9.10 69.11
Displaying items 201-250 of 473 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.