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NECEvent2014_4_5_scaffold_558

Alias: 174_005_scaffold_558

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_5_scaffold_558_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(204..2006)
DNA (1803bp) protein (601aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=6 Tax=Clostridium perfringens RepID=LEPA_CLOP1 rbh
lepA; GTP-binding protein LepA
NECEvent2014_4_5_scaffold_558_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2127..2477)
DNA (351bp) protein (117aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=Q0SRD7_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG85483.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM1
NECEvent2014_4_5_scaffold_558_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2544..3629)
DNA (1086bp) protein (362aa)
Stage II sporulation protein P n=3 Tax=Clostridium perfringens RepID=H7CY66_CLOPF rbh
Stage II sporulation protein P {ECO:0000313|EMBL:EIA16443.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262
stage II sporulation protein P
NECEvent2014_4_5_scaffold_558_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3778..4755)
DNA (978bp) protein (326aa)
gpr; germination protease (EC:3.4.24.78)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-
Germination protease n=3 Tax=Clostridium perfringens RepID=GPR_CLOP1 rbh
NECEvent2014_4_5_scaffold_558_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4951..5214
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=8 Tax=Clostridium perfringens RepID=RS20_CLOP1
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.
NECEvent2014_4_5_scaffold_558_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5310..6356)
DNA (1047bp) protein (349aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III subunit delta n=2 Tax=Clostridium perfringens RepID=H7CY69_CLOPF rbh
DNA polymerase III subunit delta {ECO:0000313|EMBL:EIA16247.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F2
NECEvent2014_4_5_scaffold_558_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6400..8055)
DNA (1656bp) protein (552aa)
Competence family protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLI4_CLOPF rbh
Competence family protein {ECO:0000313|EMBL:EDT15315.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JG
comC competence related protein
NECEvent2014_4_5_scaffold_558_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8107..8463)
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=7 Tax=Clostridium perfringens RepID=H7CY71_CLOPF
spoVAE; stage V sporulation protein AE
Stage V sporulation protein AE {ECO:0000313|EMBL:ABG85519.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (str
NECEvent2014_4_5_scaffold_558_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8528..9547)
DNA (1020bp) protein (340aa)
Stage V sporulation protein AD n=6 Tax=Clostridium perfringens RepID=Q8XIR8_CLOPE rbh
spoVAD; stage V sporulation protein AD
Stage V sporulation protein AD {ECO:0000313|EMBL:EDT73154.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D st
NECEvent2014_4_5_scaffold_558_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9550..10020)
DNA (471bp) protein (157aa)
Stage V sporulation protein AC n=6 Tax=Clostridium perfringens RepID=H7CY73_CLOPF rbh
spoVAC; stage V sporulation protein AC
Stage V sporulation protein AC {ECO:0000313|EMBL:EIA16251.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262
NECEvent2014_4_5_scaffold_558_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10152..10913)
DNA (762bp) protein (254aa)
RNA polymerase sigma factor n=10 Tax=Clostridium perfringens RepID=H7CY74_CLOPF rbh
sigF; sporulation sigma factor SigF
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE s
NECEvent2014_4_5_scaffold_558_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10931..11353)
DNA (423bp) protein (141aa)
spoIIAB; anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor {ECO:0000256|HAMAP-Rule:MF_00637}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00637};; Stage II sporulation protein AB {ECO:0000256|HAMAP-Rule:MF_00637}; TaxID=883064 species="Bacteria
Anti-sigma F factor n=10 Tax=Clostridium perfringens RepID=SP2AB_CLOP1
NECEvent2014_4_5_scaffold_558_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11367..11702)
DNA (336bp) protein (112aa)
Anti-sigma F factor antagonist n=11 Tax=Clostridium perfringens RepID=H7CY76_CLOPF
spoIIAA; anti-sigma F factor antagonist
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo
NECEvent2014_4_5_scaffold_558_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11836..13890)
DNA (2055bp) protein (685aa)
ATP-dependent protease n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLJ1_CLOPF rbh
ATP-dependent protease
Probable ATP-dependent proteinase {ECO:0000313|EMBL:BAB81757.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (
Displaying 14 items

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