ggKbase home page

NECEvent2014_4_7_scaffold_386

Alias: 174_007_scaffold_386

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_7_scaffold_386_1

Not on your lists

comp(155..535)
DNA (381bp) protein (127aa)
Putative transposition regulatory protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AUS6_CLOA9
Transposition regulatory protein TnpC {ECO:0000313|EMBL:ETJ39131.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transposition regulatory protein
NECEvent2014_4_7_scaffold_386_2

Not on your lists

comp(536..2101)
DNA (1566bp) protein (522aa)
Site-specific recombinase XerD n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K608_CLOPA rbh
Transposition regulatory protein TnpB {ECO:0000313|EMBL:ETJ39130.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
site-specific recombinase XerD
NECEvent2014_4_7_scaffold_386_3
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2101..3231)
DNA (1131bp) protein (377aa)
Site-specific recombinase XerD n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KBY4_CLOPA rbh
site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:AGK97135.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.
NECEvent2014_4_7_scaffold_386_4
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3412..4695)
DNA (1284bp) protein (428aa)
Phage terminase large subunit, PBSX family protein n=1 Tax=Clostridium intestinale URNW RepID=U2PW96_9CLOT rbh
Phage terminase large subunit, PBSX family protein {ECO:0000313|EMBL:ERK30725.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostri
phage terminase large subunit, PBSX family
NECEvent2014_4_7_scaffold_386_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4688..5128)
DNA (441bp) protein (147aa)
Putative terminase small subunit n=1 Tax=Enterococcus faecalis 06-MB-DW-09 RepID=S4D3X8_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:KEH93234.1}; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1
phage terminase small subunit
NECEvent2014_4_7_scaffold_386_6
unknown

Not on your lists

comp(5377..5538)
DNA (162bp) protein (54aa)

This feature has no annotations

NECEvent2014_4_7_scaffold_386_7
Oceanobacillus picturae, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5557..6801)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Virgibacillus halodenitrificans RepID=UPI00030D6FF2
Uncharacterized protein {ECO:0000313|EMBL:CDO04195.1}; TaxID=171693 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus picturae.;"
hypothetical protein
NECEvent2014_4_7_scaffold_386_trna_1
unknown

Not on your lists

comp(7205..7275)
DNA (71bp)
transferRNA
NECEvent2014_4_7_scaffold_386_8

Not on your lists

comp(7417..7980)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CPA7_CLOPF
Putative transcriptional regulator {ECO:0000313|EMBL:AJA42577.1}; TaxID=1567013 species="Viruses; unclassified phages.;" source="Clostridium phage phiCT453B.;"
hypothetical protein
NECEvent2014_4_7_scaffold_386_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8071..8160
DNA (90bp) protein (30aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum Af84 RepID=S8D1D0_CLOBO
hypothetical protein
Uncharacterized protein; TaxID=929505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C str. Stockholm.;"
NECEvent2014_4_7_scaffold_386_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8397..9197)
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:KEH90600.1}; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1
hypothetical protein
NECEvent2014_4_7_scaffold_386_11
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9211..9618)
DNA (408bp) protein (136aa)
Single-strand binding protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH64_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=457396 species="Bacteria; Firmicutes; Clostrid
ssb; single-stranded DNA-binding family protein
NECEvent2014_4_7_scaffold_386_12
unknown

Not on your lists

comp(9611..9817)
DNA (207bp) protein (69aa)

This feature has no annotations

NECEvent2014_4_7_scaffold_386_13
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9807..10232)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NRJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK31798.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
NECEvent2014_4_7_scaffold_386_14
unknown

Not on your lists

comp(10244..10417)
DNA (174bp) protein (58aa)

This feature has no annotations

NECEvent2014_4_7_scaffold_386_15
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10427..11170)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NRZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK31948.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
NECEvent2014_4_7_scaffold_386_16

Not on your lists

comp(11181..12014)
DNA (834bp) protein (278aa)
RecT family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSK2_CLOP1 rbh
RecT family protein
RecT family recombinase {ECO:0000313|EMBL:AJA42898.1}; TaxID=1567015 species="Viruses; unclassified phages.;" source="Clostridium phage phiCTC2A.;"
NECEvent2014_4_7_scaffold_386_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12017..12925)
DNA (909bp) protein (303aa)
Phage-related protein n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q896D3_CLOTE rbh
Uncharacterized protein {ECO:0000313|EMBL:KEH93246.1}; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1
hypothetical protein
NECEvent2014_4_7_scaffold_386_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12926..13093)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AGH3_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ31889.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_4_7_scaffold_386_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13102..13368)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RC87_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT22154.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
NECEvent2014_4_7_scaffold_386_20
unknown

Not on your lists

comp(13414..13620)
DNA (207bp) protein (69aa)

This feature has no annotations

NECEvent2014_4_7_scaffold_386_21
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13693..14277
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Bacillus cereus ATCC 10876 RepID=C2N111_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EEK50734.1}; TaxID=526980 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus ATCC 108
NECEvent2014_4_7_scaffold_386_22
unknown

Not on your lists

comp(14362..14628)
DNA (267bp) protein (89aa)

This feature has no annotations

NECEvent2014_4_7_scaffold_386_23
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14629..15393)
DNA (765bp) protein (255aa)
Phage antirepressor KilAC domain protein n=5 Tax=Clostridium difficile RepID=T2V8J1_CLODI
antirepressor, phage associated
Antirepressor {ECO:0000313|EMBL:KHS56201.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
NECEvent2014_4_7_scaffold_386_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15420..15632)
DNA (213bp) protein (71aa)
DNA binding domain, excisionase family protein n=2 Tax=Clostridium botulinum B RepID=B2TP18_CLOBB
DNA binding, excisionase family domain protein {ECO:0000313|EMBL:AIY81166.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
DNA binding domain, excisionase family protein
NECEvent2014_4_7_scaffold_386_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15682..15885)
DNA (204bp) protein (68aa)
Conserved domain protein n=2 Tax=Clostridium botulinum B RepID=B2TP20_CLOBB
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ACD25138.1}; Putative DUF739 phage protein {ECO:0000313|EMBL:CDH91697.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiace
NECEvent2014_4_7_scaffold_386_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16049..16597
DNA (549bp) protein (183aa)
Putative phage repressor n=2 Tax=Clostridium botulinum B RepID=B2TP21_CLOBB
phage repressor
Putative phage protein {ECO:0000313|EMBL:CDH91698.1}; Putative phage repressor {ECO:0000313|EMBL:ACD22623.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clo
NECEvent2014_4_7_scaffold_386_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16588..17073
DNA (486bp) protein (162aa)
Phage protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RG72_CLOPF
Phage protein {ECO:0000313|EMBL:EDT27000.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
gp23-like protein
NECEvent2014_4_7_scaffold_386_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17097..18296
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AKM9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ33334.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
prophage LambdaBa04, site-specific recombinase, phage integrase family
Displaying 29 items

View Taxonomy