ggKbase home page

NECEvent2014_4_7_scaffold_157_16

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: comp(13907..14611)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-K factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HET3_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 231.0
  • Bit_score: 423
  • Evalue 1.90e-115
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.5
  • Coverage: 231.0
  • Bit_score: 421
  • Evalue 7.60e-115
sigK; RNA polymerase sigma-28 factor SigK similarity KEGG
DB: KEGG
  • Identity: 79.2
  • Coverage: 231.0
  • Bit_score: 368
  • Evalue 2.00e-99

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 705
GTGTTTTTTTTATCTAATATAATTGAACTGCTATGTAATTCAATATTTTTAACAGGTTATATTACTGGCAATAATACATTTCCAAAACCACTTGATGAAGAAGAGGAAGAACGATATTTAAAACTATTAAAAAATGGAGATAAGGAAGCTAAGAGCATATTAATAGAAAGAAATTTAAGATTAGTGGCTCATATTGTAAAGAAATATAATTTTCCTAATAAGGATATTGATGAATTGATATCTATAGGCACAGTTGGACTGATAAAGGCTATAGATTCATTTGATGCGGGTAAGGGTACTAGACTTGCTACTTATGCATCAAGATGCATAGAAAACGAAATTTTAATGCTTTTTAGAAATAATAAGAAACAAAAGAATGAAGTGTTTTTACAGGACCCTATAGGGGTGGATAAAGAAGGAAATGAAATTTGCTTAATTGATGTATTAAGTAGCGATAAGGATTCAGTATTAGAAAAAGTAGAAAATAATATTCAAATCAAACAGTTATATAATAAAATAGGAATTTCACTTACAGAAAGAGAAGGGGCAATATTAAAGATGAGATATGGACTTATAGATGGGAGATGTAGAACTCAAAGAGAAATTGCTGCACTTCTAGGAATATCAAGATCTTATGTATCAAGAATAGAAAAAAAGGCCCTTAAAAAATTGAAGAAAGAATTATCATATAAATGAATATTATAA
PROTEIN sequence
Length: 235
VFFLSNIIELLCNSIFLTGYITGNNTFPKPLDEEEEERYLKLLKNGDKEAKSILIERNLRLVAHIVKKYNFPNKDIDELISIGTVGLIKAIDSFDAGKGTRLATYASRCIENEILMLFRNNKKQKNEVFLQDPIGVDKEGNEICLIDVLSSDKDSVLEKVENNIQIKQLYNKIGISLTEREGAILKMRYGLIDGRCRTQREIAALLGISRSYVSRIEKKALKKLKKELSYK*IL*