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NECEvent2014_4_7_scaffold_276_9

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: comp(8648..9190)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:ERK28248.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ERK28248.1};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 181.0
  • Bit_score: 184
  • Evalue 1.20e-43
RNA polymerase factor sigma-70 n=1 Tax=Clostridium intestinale URNW RepID=U2NGL0_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 181.0
  • Bit_score: 184
  • Evalue 8.60e-44
RNA polymerase factor sigma-70 similarity KEGG
DB: KEGG
  • Identity: 42.2
  • Coverage: 180.0
  • Bit_score: 144
  • Evalue 2.10e-32

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Taxonomy

Clostridium intestinale → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 543
TTGAGAGATTTTAAAGAGTTAGAAATTATGAGAGAAATAAAAAAGAAAAATACAGAAGCATTGGAAGAACTTATAAAATTATTCGGAAGGTTGGTTTATTATATTTCAAATTCTATTTTAATTAATGAAGAAGAAAAATCCTATATAGATGAATGCTATAATGATGTTTTTATTGCTATTTGGGATAATTCTGATTGTTTTGATGAGGAATATGGAAATTTAAAGGGGTGGATAGTTTCTATAACTAAATATAAAGCCCTAGATATTAAAAGGAATATATCAAAAAACAAAGGATTAGAGCTTATAGATGATGCTTTAGAAGATGAAAGAAAGCCTTTTGAAAAAGTAGAAATAGATGAAATTATTAATAATGCTTTTAAATATTTAAAAGAAGAAGATAAAAGTATTTTTATCAAAAGATATTTAGAAGGTTATTCTATAAAGGAAATAGCAATAAAAATGAATGTTTCAGAAAATTATCTTCATGCTAGAATATCAAGAGCCAGAAGAAAGTTAAAAGCTATAAAGGGGGAGGTTATATAA
PROTEIN sequence
Length: 181
LRDFKELEIMREIKKKNTEALEELIKLFGRLVYYISNSILINEEEKSYIDECYNDVFIAIWDNSDCFDEEYGNLKGWIVSITKYKALDIKRNISKNKGLELIDDALEDERKPFEKVEIDEIINNAFKYLKEEDKSIFIKRYLEGYSIKEIAIKMNVSENYLHARISRARRKLKAIKGEVI*