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NECEvent2014_4_7_scaffold_276_21

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: comp(21954..22709)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-F factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4P4_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 93.6
  • Coverage: 251.0
  • Bit_score: 460
  • Evalue 1.50e-126
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.6
  • Coverage: 251.0
  • Bit_score: 460
  • Evalue 2.10e-126
sigF; sporulation sigma factor SigF similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 251.0
  • Bit_score: 402
  • Evalue 7.90e-110

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Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 756
ATGGAAAATGGAAATATAAGAAAAGAGGTGTATAATTACGAAGAAAATTCAAAATTAATACCTCTGGCTAAAGCAGGTAATCAAGAGGCCATGAATAAGGTTATTGAAATGAATTTACCTCTTGTATCTTCTATTAGTAAAAAGTTCTTAAATAGAGGATACGATTATGAAGATATATTTCAAATAGGATCTATTGGTTTAGTTAAGGCTATTAATAATTTTGATGATAAGTTCAATGTTAAGTTTTCTACTTATGCAGTTCCTATGATAATAGGAGAAATTAAAAGATTTATAAGAGATGATGGAATAATTAAGGTTAGTAGAAATGTAAAAAGCTTAGCTAGAAAACTTCATTTTGATAAAGAAGAATTAACTAAAAAGTTAGATAGAGAACCAACAATAGAAGAATTATCAGAGTATTCACATATTGATAAAGAAGAAATTTTATTTGCCATAGAGTCCTCAGTTAATATGCAATATCTTTATGATATTATTCACCAAGACGACGGAGCTCCTGTTTTACTTATTGATAAACTAAGTGAAAAAGGAGAAGATGATAGTGACATGATTAATAGAATTGCACTTAAAGAAGCATTAAGAAGTTTAGATAGTAAGTCAAGACAAATTATTATGCTTAGGTATTTTAAAGATAAAACCCAAGTGCAAGTTGCTAAGATGCTTGGAATTAGCCAAGTTCAAGTTTCAAGAATAGAAAAAAAGGTTTTAGGATTAATGAAAGAAAAATTACAGGAATAA
PROTEIN sequence
Length: 252
MENGNIRKEVYNYEENSKLIPLAKAGNQEAMNKVIEMNLPLVSSISKKFLNRGYDYEDIFQIGSIGLVKAINNFDDKFNVKFSTYAVPMIIGEIKRFIRDDGIIKVSRNVKSLARKLHFDKEELTKKLDREPTIEELSEYSHIDKEEILFAIESSVNMQYLYDIIHQDDGAPVLLIDKLSEKGEDDSDMINRIALKEALRSLDSKSRQIIMLRYFKDKTQVQVAKMLGISQVQVSRIEKKVLGLMKEKLQE*