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NECEvent2014_5_1_scaffold_47_49

Organism: NECEvent2014_5_1_Clostridium_paraputrificum_30_65

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 15 / 38 MC: 2
Location: comp(51708..52655)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 93.7
  • Coverage: 315.0
  • Bit_score: 583
  • Evalue 1.60e-163
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 93.7
  • Coverage: 315.0
  • Bit_score: 581
  • Evalue 2.00e-163
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium intestinale URNW RepID=U2Q8E9_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 93.7
  • Coverage: 315.0
  • Bit_score: 583
  • Evalue 1.10e-163
  • rbh

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Taxonomy

Clostridium intestinale → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 948
ATGTTAGAGATTGAAAAGCCAATAATTGAGTGTGTAGAATCAAACGAAGATGGTACTTACGGTAAATACGTAGTAGAACCACTTGAAAGAGGATACGGAATTACTTTAGGTAATGCTCTTAGAAGAATTTTATTATCATCTTTACCAGGTGCTGCAACAACATCAGTTAAAATTGATGGAGTTCTTCATGAGTTCTCAACAGTTACTGGAGTTAAAGAGGATGTTACAGAATTAATTCTTAACATTAAAGCTTTAGCTTTGAGAATGAATGGTGAAGGTCAAAAGACAATTTATATAGATGCAAAAGGTCCTGGGGTTGTAACAGGAGCAGATATAAAGACTGACGGTGATGTAGAGGTTGTTAATAAGGATTTACATATTGCAACGCTTGATGAAAACGGAAGACTTTATATGGAACTAACAGTAAACAAAGGTAGAGGATATGTTACTCAAAATAAAAATAAGAGTGAAGATTTACCAATATCCGCTATTGCTGTAGACTCAATATACACACCAGTTAAGAGAGTTAACTTTACAGTTGAAAATACTAGAGTTGGTCAAATTACTGACTATGATAAGTTAACTTTAGAAATCTGGACTAATGGTACAATTAAGATTGATGAGGCTATAAGCTTATCAGCTAAAATTCTTATAGAACATTTCAAGTTATTCATGTCATTAACTGACAATACGAATGATGTTGAAATTATGATAGAAAAAGAAGAGGATAAAAAAGAGAAAGTACTAGAGATGACTGTAGAAGAGCTAGATTTATCAGTTAGATCTTATAACTGTTTAAAGAGAGCTGGAATTAATACAGTTCAAGAACTTGCATCAAAGTCAATGGATGATATGATGAAAGTAAGAAATTTAGGAAAGAAATCTCTTGAAGAAGTTGAAAGAAAATTAAAAGAACTAGGCTTAGGTTTAAGACTAAACGATGAGTAA
PROTEIN sequence
Length: 316
MLEIEKPIIECVESNEDGTYGKYVVEPLERGYGITLGNALRRILLSSLPGAATTSVKIDGVLHEFSTVTGVKEDVTELILNIKALALRMNGEGQKTIYIDAKGPGVVTGADIKTDGDVEVVNKDLHIATLDENGRLYMELTVNKGRGYVTQNKNKSEDLPISAIAVDSIYTPVKRVNFTVENTRVGQITDYDKLTLEIWTNGTIKIDEAISLSAKILIEHFKLFMSLTDNTNDVEIMIEKEEDKKEKVLEMTVEELDLSVRSYNCLKRAGINTVQELASKSMDDMMKVRNLGKKSLEEVERKLKELGLGLRLNDE*