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NECEvent2014_5_1_Propionibacterium_HGH0353_63-rel_12

NECEvent2014_5_1_Propionibacterium_sp__HGH0353_63_13
In projects: NECEvent2014_5_1

Consensus taxonomy: Propionibacterium sp. HGH0353  →  Propionibacterium  →  Propionibacteriales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

16S rRNA gene is 99% to Propionibacterium sp. H456

Displaying items 51-100 of 546 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_1_scaffold_2941 175_007_scaffold_2941
Species: Propionibacterium sp. HGH0353 (66.67%)
3 1645 bp 62.92 15.96 75.26
NECEvent2014_5_1_scaffold_1692 175_007_scaffold_1692
Species: Propionibacterium sp. HGH0353 (100%)
4 2634 bp 58.47 15.89 85.65
NECEvent2014_5_1_scaffold_3517 175_007_scaffold_3517
Species: Propionibacterium avidum (50%)
2 1397 bp 64.64 15.89 94.49
NECEvent2014_5_1_scaffold_2293 175_007_scaffold_2293
Species: Propionibacterium sp. HGH0353 (100%)
2 2043 bp 64.42 15.86 99.85
NECEvent2014_5_1_scaffold_2640 175_007_scaffold_2640
Species: Propionibacterium sp. KPL1838 (50%)
2 1806 bp 66.17 15.86 92.86
NECEvent2014_5_1_scaffold_265 175_007_scaffold_265
Species: Propionibacterium sp. HGH0353 (70.59%)
17 16778 bp 63.74 15.85 86.63
NECEvent2014_5_1_scaffold_1034 175_007_scaffold_1034
Species: Propionibacterium sp. HGH0353 (100%)
6 4256 bp 61.80 15.82 93.19
NECEvent2014_5_1_scaffold_1958 175_007_scaffold_1958
Species: Propionibacterium sp. HGH0353 (100%)
4 2344 bp 64.89 15.81 99.83
NECEvent2014_5_1_scaffold_2504 175_007_scaffold_2504
Species: Propionibacterium sp. HGH0353 (50%)
4 1890 bp 62.49 15.79 90.95
NECEvent2014_5_1_scaffold_817 175_007_scaffold_817
Species: Propionibacterium sp. HGH0353 (80%)
5 5416 bp 64.27 15.79 90.34
NECEvent2014_5_1_scaffold_3018 175_007_scaffold_3018
Species: Propionibacterium sp. HGH0353 (50%)
2 1609 bp 64.82 15.76 87.45
NECEvent2014_5_1_scaffold_399 175_007_scaffold_399
Species: Propionibacterium sp. KPL1852 (50%)
8 11066 bp 63.60 15.72 86.40
NECEvent2014_5_1_scaffold_401 175_007_scaffold_401
Species: Propionibacterium sp. HGH0353 (75%)
12 11036 bp 64.86 15.71 93.13
NECEvent2014_5_1_scaffold_505 175_007_scaffold_505
Genus: Propionibacterium (88.89%)
9 8667 bp 63.74 15.71 96.54
NECEvent2014_5_1_scaffold_3051 175_007_scaffold_3051
Species: Propionibacterium sp. HGH0353 (66.67%)
3 1596 bp 56.89 15.70 73.31
NECEvent2014_5_1_scaffold_506 175_007_scaffold_506
Species: Propionibacterium sp. HGH0353 (85.71%)
7 8579 bp 59.31 15.70 87.39
NECEvent2014_5_1_scaffold_554 175_007_scaffold_554
Species: Propionibacterium sp. HGH0353 (62.5%)
8 7802 bp 64.60 15.69 97.09
NECEvent2014_5_1_scaffold_426 175_007_scaffold_426
Species: Propionibacterium sp. HGH0353 (61.54%)
13 10181 bp 62.94 15.68 82.89
NECEvent2014_5_1_scaffold_492 175_007_scaffold_492
Species: Propionibacterium sp. HGH0353 (88.89%)
9 8901 bp 65.54 15.66 95.62
NECEvent2014_5_1_scaffold_3313 175_007_scaffold_3313
Species: Propionibacterium sp. HGH0353 (50%)
2 1475 bp 60.54 15.66 89.29
NECEvent2014_5_1_scaffold_618 175_007_scaffold_618
Species: Propionibacterium sp. HGH0353 (100%)
4 7146 bp 64.01 15.62 93.49
NECEvent2014_5_1_scaffold_579 175_007_scaffold_579
Species: Propionibacterium sp. HGH0353 (57.14%)
7 7528 bp 62.39 15.58 89.51
NECEvent2014_5_1_scaffold_174 175_007_scaffold_174
Species: Propionibacterium sp. HGH0353 (95.83%)
24 25406 bp 63.24 15.57 92.54
NECEvent2014_5_1_scaffold_1921 175_007_scaffold_1921
Species: Propionibacterium sp. HGH0353 (66.67%)
3 2382 bp 67.88 15.55 98.61
NECEvent2014_5_1_scaffold_910 175_007_scaffold_910
Species: Propionibacterium sp. HGH0353 (80%)
5 4878 bp 63.35 15.50 93.05
NECEvent2014_5_1_scaffold_1970 175_007_scaffold_1970
Species: Propionibacterium sp. HGH0353 (66.67%)
3 2333 bp 67.38 15.50 97.34
NECEvent2014_5_1_scaffold_225 175_007_scaffold_225
Species: Propionibacterium sp. HGH0353 (68.75%)
16 19683 bp 63.12 15.49 95.03
NECEvent2014_5_1_scaffold_1466 175_007_scaffold_1466
Species: Propionibacterium sp. KPL1838 (66.67%)
3 3013 bp 66.71 15.48 95.69
NECEvent2014_5_1_scaffold_429 175_007_scaffold_429
Species: Propionibacterium sp. HGH0353 (73.33%)
15 10150 bp 62.87 15.47 85.54
NECEvent2014_5_1_scaffold_767 175_007_scaffold_767
Species: Propionibacterium sp. HGH0353 (100%)
5 5774 bp 65.17 15.46 90.15
NECEvent2014_5_1_scaffold_1761 175_007_scaffold_1761
Species: Propionibacterium sp. HGH0353 (66.67%)
3 2555 bp 64.27 15.44 96.87
NECEvent2014_5_1_scaffold_487 175_007_scaffold_487
Genus: Propionibacterium (100%)
11 8981 bp 63.21 15.40 80.37
NECEvent2014_5_1_scaffold_169 175_007_scaffold_169
Species: Propionibacterium acnes (73.08%)
26 26192 bp 63.38 15.39 97.55
NECEvent2014_5_1_scaffold_1039 175_007_scaffold_1039
Species: Propionibacterium sp. HGH0353 (60%)
5 4240 bp 65.80 15.39 93.96
NECEvent2014_5_1_scaffold_471 175_007_scaffold_471
Genus: Propionibacterium (92.31%)
13 9166 bp 63.96 15.38 93.77
NECEvent2014_5_1_scaffold_830 175_007_scaffold_830
Species: Propionibacterium sp. HGH0353 (60%)
5 5342 bp 63.46 15.33 99.85
NECEvent2014_5_1_scaffold_1972 175_007_scaffold_1972
Species: Propionibacterium sp. HGH0353 (100%)
1 2331 bp 65.38 15.32 98.84
NECEvent2014_5_1_scaffold_1346 175_007_scaffold_1346
Species: Propionibacterium sp. KPL2005 (75%)
4 3273 bp 66.09 15.31 97.71
NECEvent2014_5_1_scaffold_1640 175_007_scaffold_1640
Species: Propionibacterium sp. HGH0353 (100%)
5 2706 bp 60.42 15.30 82.71
NECEvent2014_5_1_scaffold_879 175_007_scaffold_879
Species: Propionibacterium sp. HGH0353 (100%)
4 5031 bp 63.27 15.27 87.84
NECEvent2014_5_1_scaffold_3826 175_007_scaffold_3826
Genus: Propionibacterium (66.67%)
3 1288 bp 63.59 15.26 88.74
NECEvent2014_5_1_scaffold_1273 175_007_scaffold_1273
Species: Propionibacterium sp. KPL2005 (75%)
4 3469 bp 62.67 15.26 98.33
NECEvent2014_5_1_scaffold_1537 175_007_scaffold_1537
Species: Propionibacterium sp. HGH0353 (50%)
4 2853 bp 61.93 15.25 89.38
NECEvent2014_5_1_scaffold_568 175_007_scaffold_568
Species: Propionibacterium sp. HGH0353 (70%)
10 7604 bp 64.16 15.25 92.32
NECEvent2014_5_1_scaffold_438 175_007_scaffold_438
Genus: Propionibacterium (88.89%)
9 9892 bp 61.84 15.22 95.56
NECEvent2014_5_1_scaffold_126 175_007_scaffold_126
Genus: Propionibacterium (91.18%)
34 35143 bp 63.09 15.22 86.75
NECEvent2014_5_1_scaffold_1147 175_007_scaffold_1147
Species: Propionibacterium sp. HGH0353 (66.67%)
3 3837 bp 63.75 15.21 94.29
NECEvent2014_5_1_scaffold_2273 175_007_scaffold_2273
Species: Propionibacterium sp. HGH0353 (66.67%)
3 2058 bp 65.21 15.16 69.68
NECEvent2014_5_1_scaffold_1764 175_007_scaffold_1764
Species: Propionibacterium avidum (50%)
2 2553 bp 63.45 15.16 100.12
NECEvent2014_5_1_scaffold_2321 175_007_scaffold_2321
Species: Propionibacterium sp. HGH0353 (100%)
2 2018 bp 62.24 15.16 82.06
Displaying items 51-100 of 546 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.