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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 551-600 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4126 175_001_scaffold_4126
Species: Mobiluncus curtisii (100%)
2 1540 bp 54.68 8.86 91.56
NECEvent2014_5_2_scaffold_4384 175_001_scaffold_4384
Species: Actinomyces sp. HPA0247 (50%)
2 1471 bp 61.25 6.53 89.73
NECEvent2014_5_2_scaffold_6553 175_001_scaffold_6553
Species: Actinomyces sp. oral taxon 181 (50%)
2 1075 bp 62.98 5.86 100.19
NECEvent2014_5_2_scaffold_2338 175_001_scaffold_2338
Species: Actinomyces turicensis (50%)
2 2323 bp 62.03 4.65 89.88
NECEvent2014_5_2_scaffold_5022 175_001_scaffold_5022
Species: Beutenbergia cavernae (50%)
2 1332 bp 59.08 7.32 92.12
NECEvent2014_5_2_scaffold_3111 175_001_scaffold_3111
Species: Propionibacterium acnes (50%)
2 1886 bp 57.64 6.52 88.28
NECEvent2014_5_2_scaffold_5023 175_001_scaffold_5023
Species: Actinomyces turicensis (100%)
2 1331 bp 60.26 7.44 99.85
NECEvent2014_5_2_scaffold_3112 175_001_scaffold_3112
Species: Actinomyces sp. oral taxon 180 (50%)
2 1886 bp 59.97 5.25 89.87
NECEvent2014_5_2_scaffold_6816 175_001_scaffold_6816
Species: Actinomyces cardiffensis (50%)
2 1039 bp 58.52 5.20 56.88
NECEvent2014_5_2_scaffold_3881 175_001_scaffold_3881
Species: Cellulomonas bogoriensis (100%)
2 1614 bp 61.71 6.13 100.19
NECEvent2014_5_2_scaffold_4137 175_001_scaffold_4137
Species: Propionibacterium acnes (100%)
2 1537 bp 64.28 5.27 92.52
NECEvent2014_5_2_scaffold_3370 175_001_scaffold_3370
Species: Chlamydia trachomatis (50%)
2 1786 bp 63.38 5.21 94.74
NECEvent2014_5_2_scaffold_5026 175_001_scaffold_5026
Species: Chlamydia trachomatis (50%)
2 1330 bp 60.00 7.44 90.90
NECEvent2014_5_2_scaffold_3115 175_001_scaffold_3115
Species: Actinomyces sp. HPA0247 (50%)
2 1885 bp 58.30 7.40 93.74
NECEvent2014_5_2_scaffold_3371 175_001_scaffold_3371
Species: Actinomyces sp. oral taxon 178 (50%)
2 1786 bp 59.69 6.55 92.72
NECEvent2014_5_2_scaffold_2348 175_001_scaffold_2348
Species: Arcanobacterium haemolyticum (100%)
2 2315 bp 56.46 7.32 99.27
NECEvent2014_5_2_scaffold_4141 175_001_scaffold_4141
Species: Actinomyces turicensis (50%)
2 1535 bp 60.91 7.92 91.86
NECEvent2014_5_2_scaffold_5029 175_001_scaffold_5029
Species: Mobiluncus mulieris (100%)
2 1330 bp 58.87 5.98 98.80
NECEvent2014_5_2_scaffold_6309 175_001_scaffold_6309
Species: Propionibacterium acnes (100%)
2 1109 bp 56.18 6.09 77.37
NECEvent2014_5_2_scaffold_3376 175_001_scaffold_3376
Species: Actinomyces cardiffensis (50%)
2 1785 bp 57.03 5.88 84.37
NECEvent2014_5_2_scaffold_4913 175_001_scaffold_4913
Species: Varibaculum cambriense (50%)
2 1354 bp 49.85 5.21 97.93
NECEvent2014_5_2_scaffold_5289 175_001_scaffold_5289
Species: Actinomyces neuii (100%)
2 1280 bp 57.89 7.03 95.39
NECEvent2014_5_2_scaffold_4658 175_001_scaffold_4658
Species: Actinomyces sp. oral taxon 181 (50%)
2 1405 bp 58.86 5.34 93.74
NECEvent2014_5_2_scaffold_6570 175_001_scaffold_6570
Species: Propionibacterium humerusii (50%)
2 1072 bp 58.68 5.60 31.90
NECEvent2014_5_2_scaffold_4147 175_001_scaffold_4147
Species: Caenorhabditis remanei (50%)
2 1534 bp 59.45 5.38 95.44
NECEvent2014_5_2_scaffold_4403 175_001_scaffold_4403
Species: Mobiluncus curtisii (100%)
2 1466 bp 56.75 7.57 100.07
NECEvent2014_5_2_scaffold_5291 175_001_scaffold_5291
Species: Propionimicrobium lymphophilum (50%)
2 1280 bp 51.02 7.03 74.53
NECEvent2014_5_2_scaffold_6571 175_001_scaffold_6571
Species: Corynebacterium doosanense (50%)
2 1072 bp 62.59 5.88 90.39
NECEvent2014_5_2_scaffold_4404 175_001_scaffold_4404
Species: Actinomyces turicensis (50%)
2 1466 bp 61.32 5.12 100.07
NECEvent2014_5_2_scaffold_5292 175_001_scaffold_5292
Species: Actinomyces neuii (50%)
2 1279 bp 63.72 6.10 88.90
NECEvent2014_5_2_scaffold_6060 175_001_scaffold_6060
Species: Actinomyces sp. oral taxon 181 (50%)
2 1148 bp 58.10 6.01 91.99
NECEvent2014_5_2_scaffold_4406 175_001_scaffold_4406
Species: Propionibacterium sp. KPL1852 (50%)
2 1465 bp 58.09 5.73 89.49
NECEvent2014_5_2_scaffold_4662 175_001_scaffold_4662
Species: Propionibacterium sp. HGH0353 (50%)
2 1404 bp 62.96 5.88 81.41
NECEvent2014_5_2_scaffold_5550 175_001_scaffold_5550
Species: Actinomyces sp. oral taxon 172 (50%)
2 1236 bp 58.98 6.80 99.76
NECEvent2014_5_2_scaffold_6832 175_001_scaffold_6832
Species: Actinomyces odontolyticus (50%)
2 1037 bp 58.05 5.35 88.52
NECEvent2014_5_2_scaffold_5809 175_001_scaffold_5809
Species: Listeria riparia (50%)
2 1190 bp 56.81 7.82 67.56
NECEvent2014_5_2_scaffold_4410 175_001_scaffold_4410
Species: Actinomyces europaeus (50%)
2 1465 bp 61.64 6.76 99.11
NECEvent2014_5_2_scaffold_5042 175_001_scaffold_5042
Species: Actinomyces odontolyticus (50%)
2 1326 bp 58.82 5.20 91.40
NECEvent2014_5_2_scaffold_3899 175_001_scaffold_3899
Species: Actinomyces cardiffensis (100%)
2 1607 bp 56.81 7.47 90.54
NECEvent2014_5_2_scaffold_2620 175_001_scaffold_2620
Species: Propionibacterium acidipropionici (50%)
2 2141 bp 60.21 7.57 89.40
NECEvent2014_5_2_scaffold_3900 175_001_scaffold_3900
Species: Actinomyces sp. ICM54 (50%)
2 1607 bp 60.98 6.07 89.79
NECEvent2014_5_2_scaffold_6324 175_001_scaffold_6324
Species: Actinomyces sp. oral taxon 178 (50%)
2 1107 bp 56.19 9.21 72.63
NECEvent2014_5_2_scaffold_3901 175_001_scaffold_3901
Species: Propionibacterium sp. KPL2005 (50%)
2 1607 bp 57.81 6.35 79.71
NECEvent2014_5_2_scaffold_5557 175_001_scaffold_5557
Species: Mobiluncus curtisii (100%)
2 1234 bp 58.18 5.96 98.46
NECEvent2014_5_2_scaffold_3394 175_001_scaffold_3394
Species: Actinomyces coleocanis (50%)
2 1777 bp 53.24 6.33 76.81
NECEvent2014_5_2_scaffold_2883 175_001_scaffold_2883
Species: Actinomyces turicensis (50%)
2 1989 bp 54.95 8.60 72.70
NECEvent2014_5_2_scaffold_5307 175_001_scaffold_5307
Species: Actinomyces sp. S6-Spd3 (50%)
2 1276 bp 58.15 5.17 92.63
NECEvent2014_5_2_scaffold_4420 175_001_scaffold_4420
Species: Actinomyces sp. S6-Spd3 (50%)
2 1461 bp 59.89 6.57 92.20
NECEvent2014_5_2_scaffold_6332 175_001_scaffold_6332
Species: Actinomyces georgiae (50%)
2 1106 bp 58.50 5.83 86.26
NECEvent2014_5_2_scaffold_2373 175_001_scaffold_2373
Species: Corynebacterium variabile (50%)
2 2297 bp 57.21 5.49 81.24
Displaying items 551-600 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.