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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 501-550 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_3576 175_001_scaffold_3576
Species: Chlamydia trachomatis (50%)
2 1712 bp 58.53 5.08 80.61
NECEvent2014_5_2_scaffold_5488 175_001_scaffold_5488
Species: Propionibacterium sp. KPL2005 (50%)
2 1246 bp 60.67 5.42 89.09
NECEvent2014_5_2_scaffold_3577 175_001_scaffold_3577
Species: Actinomyces sp. ICM47 (50%)
2 1711 bp 59.56 6.84 95.91
NECEvent2014_5_2_scaffold_5745 175_001_scaffold_5745
Species: Actinomyces sp. oral taxon 180 (50%)
2 1200 bp 57.08 6.50 81.75
NECEvent2014_5_2_scaffold_1786 175_001_scaffold_1786
Species: Actinomyces sp. oral taxon 180 (50%)
2 2865 bp 58.29 5.97 89.53
NECEvent2014_5_2_scaffold_5746 175_001_scaffold_5746
Species: Actinomyces sp. oral taxon 181 (50%)
2 1200 bp 61.33 6.75 100.50
NECEvent2014_5_2_scaffold_1531 175_001_scaffold_1531
Species: Actinomyces cardiffensis (50%)
2 3216 bp 62.44 6.67 99.07
NECEvent2014_5_2_scaffold_6771 175_001_scaffold_6771
Species: Actinomyces sp. oral taxon 172 (50%)
2 1045 bp 60.38 3.44 100.48
NECEvent2014_5_2_scaffold_3837 175_001_scaffold_3837
Species: Actinomyces odontolyticus (50%)
2 1627 bp 58.51 5.53 100.12
NECEvent2014_5_2_scaffold_1790 175_001_scaffold_1790
Species: Actinomyces cardiffensis (50%)
2 2864 bp 61.21 5.45 97.00
NECEvent2014_5_2_scaffold_4350 175_001_scaffold_4350
Species: Actinomyces odontolyticus (50%)
2 1482 bp 60.93 7.19 89.68
NECEvent2014_5_2_scaffold_7118 175_001_scaffold_7118
Species: Actinomyces europaeus (50%)
2 1003 bp 59.32 6.58 99.90
NECEvent2014_5_2_scaffold_3327 175_001_scaffold_3327
Species: Actinomyces sp. S6-Spd3 (50%)
2 1798 bp 61.07 7.01 88.26
NECEvent2014_5_2_scaffold_4351 175_001_scaffold_4351
Species: Propionibacterium sp. KPL2005 (50%)
2 1482 bp 64.51 9.01 91.50
NECEvent2014_5_2_scaffold_6007 175_001_scaffold_6007
Species: Actinomyces sp. oral taxon 180 (50%)
2 1154 bp 63.78 6.24 96.19
NECEvent2014_5_2_scaffold_5240 175_001_scaffold_5240
Species: Actinomyces turicensis (50%)
2 1289 bp 55.93 5.93 97.52
NECEvent2014_5_2_scaffold_1281 175_001_scaffold_1281
Species: Actinomyces sp. oral taxon 181 (50%)
2 3657 bp 58.96 7.18 78.59
NECEvent2014_5_2_scaffold_3075 175_001_scaffold_3075
Species: Actinomyces neuii (50%)
2 1901 bp 62.97 6.39 84.90
NECEvent2014_5_2_scaffold_5499 175_001_scaffold_5499
Species: Actinomyces cardiffensis (50%)
2 1244 bp 60.69 5.06 99.84
NECEvent2014_5_2_scaffold_2821 175_001_scaffold_2821
Species: Actinomyces sp. ICM39 (50%)
2 2026 bp 61.01 7.11 85.44
NECEvent2014_5_2_scaffold_3846 175_001_scaffold_3846
Species: Actinomyces sp. oral taxon 180 (50%)
2 1625 bp 61.11 6.28 95.08
NECEvent2014_5_2_scaffold_4614 175_001_scaffold_4614
Species: Beutenbergia cavernae (100%)
2 1415 bp 58.23 6.57 90.74
NECEvent2014_5_2_scaffold_7128 175_001_scaffold_7128
Species: Propionibacterium acidipropionici (50%)
2 1000 bp 58.60 5.70 78.60
NECEvent2014_5_2_scaffold_4361 175_001_scaffold_4361
Species: Actinomyces massiliensis (50%)
2 1479 bp 63.56 6.49 94.52
NECEvent2014_5_2_scaffold_4363 175_001_scaffold_4363
Species: Actinomyces graevenitzii (50%)
2 1479 bp 59.03 5.58 93.31
NECEvent2014_5_2_scaffold_3084 175_001_scaffold_3084
Species: Propionibacterium sp. KPL2000 (50%)
2 1897 bp 64.47 5.46 86.66
NECEvent2014_5_2_scaffold_3340 175_001_scaffold_3340
Species: Arcanobacterium sp. S3PF19 (50%)
2 1794 bp 58.81 6.86 92.98
NECEvent2014_5_2_scaffold_4620 175_001_scaffold_4620
Species: Actinomyces cardiffensis (50%)
2 1413 bp 61.50 6.37 100.00
NECEvent2014_5_2_scaffold_4876 175_001_scaffold_4876
Species: Actinomyces sp. ICM47 (50%)
2 1360 bp 57.50 5.07 79.63
NECEvent2014_5_2_scaffold_6788 175_001_scaffold_6788
Species: Brevibacterium linens (50%)
2 1042 bp 57.39 5.76 65.64
NECEvent2014_5_2_scaffold_4109 175_001_scaffold_4109
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1544 bp 60.43 6.02 65.09
NECEvent2014_5_2_scaffold_2831 175_001_scaffold_2831
Species: Dermabacter sp. HFH0086 (50%)
2 2020 bp 51.44 7.50 84.95
NECEvent2014_5_2_scaffold_5767 175_001_scaffold_5767
Species: Mobiluncus mulieris (50%)
2 1196 bp 59.36 7.02 78.01
NECEvent2014_5_2_scaffold_6023 175_001_scaffold_6023
Species: Actinomyces georgiae (50%)
2 1152 bp 61.55 5.21 99.74
NECEvent2014_5_2_scaffold_6537 175_001_scaffold_6537
Species: Actinomyces turicensis (50%)
2 1077 bp 59.24 8.08 73.54
NECEvent2014_5_2_scaffold_6538 175_001_scaffold_6538
Species: Propionibacterium sp. KPL1838 (50%)
2 1077 bp 61.28 4.87 95.54
NECEvent2014_5_2_scaffold_5516 175_001_scaffold_5516
Species: Actinomyces sp. S6-Spd3 (50%)
2 1242 bp 59.42 8.45 80.68
NECEvent2014_5_2_scaffold_6030 175_001_scaffold_6030
Species: Actinomyces georgiae (50%)
2 1152 bp 59.11 7.16 81.77
NECEvent2014_5_2_scaffold_6542 175_001_scaffold_6542
Species: Actinobaculum massiliense (50%)
2 1076 bp 61.71 6.69 85.59
NECEvent2014_5_2_scaffold_6798 175_001_scaffold_6798
Species: Actinomyces georgiae (50%)
2 1042 bp 57.58 8.35 79.17
NECEvent2014_5_2_scaffold_5519 175_001_scaffold_5519
Species: Actinomyces sp. oral taxon 181 (50%)
2 1242 bp 62.32 6.28 95.89
NECEvent2014_5_2_scaffold_1305 175_001_scaffold_1305
Species: Propionibacterium freudenreichii (50%)
2 3604 bp 54.52 6.87 71.42
NECEvent2014_5_2_scaffold_2329 175_001_scaffold_2329
Species: Mobiluncus curtisii (100%)
2 2331 bp 59.42 6.69 96.27
NECEvent2014_5_2_scaffold_5010 175_001_scaffold_5010
Species: Actinomyces cardiffensis (50%)
2 1334 bp 59.82 7.31 99.85
NECEvent2014_5_2_scaffold_2587 175_001_scaffold_2587
Species: Actinomyces odontolyticus (50%)
2 2159 bp 58.82 6.88 93.10
NECEvent2014_5_2_scaffold_6291 175_001_scaffold_6291
Species: Gordonia polyisoprenivorans (50%)
2 1112 bp 60.07 4.32 73.11
NECEvent2014_5_2_scaffold_2588 175_001_scaffold_2588
Species: Corynebacterium sp. HFH0082 (50%)
2 2159 bp 54.52 6.81 96.29
NECEvent2014_5_2_scaffold_3612 175_001_scaffold_3612
Species: Actinomyces sp. oral taxon 180 (50%)
2 1700 bp 57.18 7.59 87.35
NECEvent2014_5_2_scaffold_1565 175_001_scaffold_1565
Species: Actinomyces sp. oral taxon 181 (50%)
2 3162 bp 60.18 6.78 99.34
NECEvent2014_5_2_scaffold_3101 175_001_scaffold_3101
Species: Propionibacterium freudenreichii (50%)
2 1888 bp 59.11 7.39 85.01
Displaying items 501-550 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.