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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 451-500 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_3544 175_001_scaffold_3544
Species: Actinomyces odontolyticus (50%)
2 1721 bp 62.23 8.02 97.27
NECEvent2014_5_2_scaffold_5201 175_001_scaffold_5201
Species: Microbacterium sp. SUBG005 (50%)
2 1295 bp 60.62 8.11 98.92
NECEvent2014_5_2_scaffold_6737 175_001_scaffold_6737
Species: Propionibacterium freudenreichii (50%)
2 1049 bp 55.29 5.15 82.36
NECEvent2014_5_2_scaffold_6482 175_001_scaffold_6482
Species: Actinomyces cardiffensis (50%)
2 1084 bp 60.89 6.09 95.76
NECEvent2014_5_2_scaffold_6738 175_001_scaffold_6738
Species: Actinomyces cardiffensis (50%)
2 1049 bp 59.96 8.44 100.10
NECEvent2014_5_2_scaffold_3547 175_001_scaffold_3547
Species: Actinomyces sp. oral taxon 180 (50%)
2 1721 bp 57.58 5.58 88.90
NECEvent2014_5_2_scaffold_4828 175_001_scaffold_4828
Species: Varibaculum cambriense (50%)
2 1368 bp 54.39 6.36 63.82
NECEvent2014_5_2_scaffold_6740 175_001_scaffold_6740
Species: Propionibacterium sp. KPL1838 (50%)
2 1049 bp 61.96 7.86 58.53
NECEvent2014_5_2_scaffold_4317 175_001_scaffold_4317
Species: Actinomyces sp. oral taxon 877 (50%)
2 1490 bp 59.87 6.14 98.26
NECEvent2014_5_2_scaffold_3294 175_001_scaffold_3294
Species: Actinomyces sp. oral taxon 181 (50%)
2 1811 bp 59.03 6.29 100.06
NECEvent2014_5_2_scaffold_5718 175_001_scaffold_5718
Species: Actinomyces sp. S6-Spd3 (50%)
2 1204 bp 60.13 5.98 95.18
NECEvent2014_5_2_scaffold_3039 175_001_scaffold_3039
Species: Propionibacterium sp. KPL1852 (50%)
2 1920 bp 62.55 6.09 79.69
NECEvent2014_5_2_scaffold_1760 175_001_scaffold_1760
Species: Actinomyces georgiae (50%)
2 2886 bp 60.85 6.44 102.60
NECEvent2014_5_2_scaffold_2784 175_001_scaffold_2784
Species: Actinomyces sp. oral taxon 172 (50%)
2 2049 bp 61.40 6.88 98.54
NECEvent2014_5_2_scaffold_3552 175_001_scaffold_3552
Species: Propionimicrobium lymphophilum (50%)
2 1719 bp 61.95 5.76 88.48
NECEvent2014_5_2_scaffold_2017 175_001_scaffold_2017
Species: Actinomyces sp. oral taxon 178 (50%)
2 2599 bp 61.37 6.00 94.07
NECEvent2014_5_2_scaffold_3042 175_001_scaffold_3042
Species: Actinomyces turicensis (50%)
2 1919 bp 60.45 7.97 73.63
NECEvent2014_5_2_scaffold_4834 175_001_scaffold_4834
Species: Propionibacterium sp. KPL1852 (100%)
2 1367 bp 54.57 6.36 100.29
NECEvent2014_5_2_scaffold_4580 175_001_scaffold_4580
Species: Bifidobacterium reuteri (50%)
2 1423 bp 60.08 6.32 69.57
NECEvent2014_5_2_scaffold_4836 175_001_scaffold_4836
Species: Actinomyces turicensis (50%)
2 1366 bp 59.96 5.71 100.15
NECEvent2014_5_2_scaffold_3047 175_001_scaffold_3047
Species: Chlamydia trachomatis (50%)
2 1916 bp 59.66 7.99 73.85
NECEvent2014_5_2_scaffold_7095 175_001_scaffold_7095
Species: Propionibacterium propionicum (50%)
2 1006 bp 59.15 8.65 87.38
NECEvent2014_5_2_scaffold_2792 175_001_scaffold_2792
Species: Mobiluncus mulieris (50%)
2 2041 bp 49.24 5.29 91.72
NECEvent2014_5_2_scaffold_5216 175_001_scaffold_5216
Species: Actinomyces turicensis (50%)
2 1293 bp 62.03 5.34 100.00
NECEvent2014_5_2_scaffold_5217 175_001_scaffold_5217
Species: Actinomyces sp. oral taxon 877 (50%)
2 1293 bp 58.93 6.38 97.45
NECEvent2014_5_2_scaffold_6753 175_001_scaffold_6753
Species: Streptomyces sp. AcH 505 (50%)
2 1047 bp 53.68 7.74 98.57
NECEvent2014_5_2_scaffold_1259 175_001_scaffold_1259
Species: Beutenbergia cavernae (50%)
2 3697 bp 57.15 7.22 92.91
NECEvent2014_5_2_scaffold_5731 175_001_scaffold_5731
Species: Actinomyces sp. S6-Spd3 (50%)
2 1203 bp 58.44 6.73 93.02
NECEvent2014_5_2_scaffold_6499 175_001_scaffold_6499
Species: Dermabacter hominis (50%)
2 1081 bp 61.05 5.69 86.86
NECEvent2014_5_2_scaffold_1516 175_001_scaffold_1516
Species: Actinomyces sp. oral taxon 877 (50%)
2 3231 bp 64.04 6.82 100.09
NECEvent2014_5_2_scaffold_4588 175_001_scaffold_4588
Species: Actinomyces sp. ICM54 (50%)
2 1421 bp 59.04 7.39 91.63
NECEvent2014_5_2_scaffold_6500 175_001_scaffold_6500
Species: Actinomyces sp. S6-Spd3 (50%)
2 1081 bp 63.37 3.89 100.18
NECEvent2014_5_2_scaffold_3821 175_001_scaffold_3821
Species: Actinomyces neuii (50%)
2 1631 bp 58.31 6.71 79.83
NECEvent2014_5_2_scaffold_5734 175_001_scaffold_5734
Species: Actinotignum schaalii (50%)
2 1202 bp 58.49 5.37 71.38
NECEvent2014_5_2_scaffold_6246 175_001_scaffold_6246
Species: Actinomyces sp. S6-Spd3 (50%)
2 1119 bp 60.50 5.09 99.20
NECEvent2014_5_2_scaffold_4847 175_001_scaffold_4847
Species: Actinotalea fermentans (50%)
2 1365 bp 59.19 7.47 100.22
NECEvent2014_5_2_scaffold_752 175_001_scaffold_752
Species: Actinotalea fermentans (50%)
2 5919 bp 60.16 7.15 94.93
NECEvent2014_5_2_scaffold_1776 175_001_scaffold_1776
Species: Propionibacterium sp. KPL1852 (100%)
2 2875 bp 62.40 5.63 91.72
NECEvent2014_5_2_scaffold_3312 175_001_scaffold_3312
Species: Propionibacterium sp. KPL1838 (50%)
2 1803 bp 59.18 5.07 13.64
NECEvent2014_5_2_scaffold_3569 175_001_scaffold_3569
Species: Actinomyces sp. ICM47 (50%)
2 1713 bp 60.42 6.83 83.19
NECEvent2014_5_2_scaffold_4337 175_001_scaffold_4337
Species: Actinomyces cardiffensis (50%)
2 1486 bp 58.14 6.76 80.55
NECEvent2014_5_2_scaffold_4850 175_001_scaffold_4850
Species: Actinomyces neuii (100%)
2 1364 bp 59.60 5.50 97.65
NECEvent2014_5_2_scaffold_2547 175_001_scaffold_2547
Species: Chlamydia trachomatis (50%)
2 2184 bp 60.76 5.01 100.14
NECEvent2014_5_2_scaffold_4083 175_001_scaffold_4083
Species: Actinomyces sp. oral taxon 181 (50%)
2 1552 bp 62.50 6.96 100.13
NECEvent2014_5_2_scaffold_4595 175_001_scaffold_4595
Species: Actinomyces neuii (50%)
2 1418 bp 57.83 6.35 92.45
NECEvent2014_5_2_scaffold_4851 175_001_scaffold_4851
Species: Propionibacterium sp. KPL1852 (50%)
2 1364 bp 62.02 4.29 87.32
NECEvent2014_5_2_scaffold_5483 175_001_scaffold_5483
Species: Actinomyces cardiffensis (50%)
2 1247 bp 63.51 6.74 100.80
NECEvent2014_5_2_scaffold_1780 175_001_scaffold_1780
Species: Actinomyces sp. S6-Spd3 (50%)
2 2870 bp 60.03 6.69 88.22
NECEvent2014_5_2_scaffold_3574 175_001_scaffold_3574
Species: Actinomyces sp. oral taxon 181 (50%)
2 1713 bp 61.30 7.36 94.57
NECEvent2014_5_2_scaffold_3320 175_001_scaffold_3320
Species: Actinomyces turicensis (50%)
2 1802 bp 60.82 6.49 99.06
Displaying items 451-500 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.