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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 401-450 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4769 175_001_scaffold_4769
Species: Actinomyces sp. ICM54 (50%)
2 1382 bp 58.76 5.86 97.68
NECEvent2014_5_2_scaffold_5401 175_001_scaffold_5401
Species: Actinomyces urogenitalis (100%)
2 1257 bp 61.73 5.37 96.42
NECEvent2014_5_2_scaffold_6937 175_001_scaffold_6937
Species: Propionibacterium avidum (50%)
2 1024 bp 61.72 4.69 49.22
NECEvent2014_5_2_scaffold_3490 175_001_scaffold_3490
Species: Propionibacterium avidum (50%)
2 1741 bp 60.25 4.65 69.44
NECEvent2014_5_2_scaffold_6686 175_001_scaffold_6686
Species: Propionibacterium sp. KPL2005 (50%)
2 1055 bp 58.96 5.97 100.95
NECEvent2014_5_2_scaffold_2471 175_001_scaffold_2471
Species: Saccharopolyspora rectivirgula (50%)
2 2232 bp 60.71 6.59 97.45
NECEvent2014_5_2_scaffold_3241 175_001_scaffold_3241
Species: Actinomyces sp. oral taxon 848 (50%)
2 1834 bp 59.11 6.87 98.96
NECEvent2014_5_2_scaffold_2218 175_001_scaffold_2218
Species: Chlamydia trachomatis (50%)
2 2415 bp 60.87 6.46 96.15
NECEvent2014_5_2_scaffold_5410 175_001_scaffold_5410
Species: Actinomyces sp. oral taxon 181 (50%)
2 1256 bp 59.63 5.61 83.12
NECEvent2014_5_2_scaffold_4267 175_001_scaffold_4267
Species: Propionibacterium sp. KPL2000 (50%)
2 1501 bp 63.29 6.40 96.14
NECEvent2014_5_2_scaffold_6179 175_001_scaffold_6179
Species: Actinomyces johnsonii (50%)
2 1130 bp 60.97 6.37 98.23
NECEvent2014_5_2_scaffold_2989 175_001_scaffold_2989
Species: Actinomyces sp. oral taxon 180 (50%)
2 1939 bp 60.65 5.65 84.94
NECEvent2014_5_2_scaffold_4013 175_001_scaffold_4013
Species: Dermabacter hominis (50%)
2 1570 bp 61.40 5.54 66.37
NECEvent2014_5_2_scaffold_5669 175_001_scaffold_5669
Species: Propionibacterium sp. KPL1852 (50%)
2 1212 bp 54.79 4.70 100.25
NECEvent2014_5_2_scaffold_6438 175_001_scaffold_6438
Species: Actinomyces sp. oral taxon 877 (50%)
2 1090 bp 60.00 7.98 104.86
NECEvent2014_5_2_scaffold_3504 175_001_scaffold_3504
Species: Actinomyces urogenitalis (50%)
2 1735 bp 60.98 7.44 86.80
NECEvent2014_5_2_scaffold_5929 175_001_scaffold_5929
Species: Actinomyces sp. S4-C9 (50%)
2 1168 bp 62.50 7.58 98.63
NECEvent2014_5_2_scaffold_5419 175_001_scaffold_5419
Species: Thermotoga naphthophila (50%)
2 1254 bp 53.75 8.13 93.30
NECEvent2014_5_2_scaffold_6444 175_001_scaffold_6444
Species: Actinomyces neuii (100%)
2 1089 bp 60.15 6.06 93.94
NECEvent2014_5_2_scaffold_1461 175_001_scaffold_1461
Species: Actinomyces sp. S6-Spd3 (100%)
2 3325 bp 58.20 6.99 80.12
NECEvent2014_5_2_scaffold_3509 175_001_scaffold_3509
Species: Microbacterium azadirachtae (50%)
2 1733 bp 56.32 7.10 99.19
NECEvent2014_5_2_scaffold_5677 175_001_scaffold_5677
Species: Actinomyces turicensis (50%)
2 1211 bp 60.12 6.56 94.38
NECEvent2014_5_2_scaffold_6445 175_001_scaffold_6445
Species: Actinomyces odontolyticus (50%)
2 1089 bp 59.96 6.89 91.46
NECEvent2014_5_2_scaffold_5678 175_001_scaffold_5678
Species: Actinomyces sp. oral taxon 181 (50%)
2 1211 bp 62.10 5.95 99.59
NECEvent2014_5_2_scaffold_6703 175_001_scaffold_6703
Species: Propionibacterium sp. KPL1852 (100%)
2 1053 bp 58.59 6.84 48.43
NECEvent2014_5_2_scaffold_1976 175_001_scaffold_1976
Species: Chlamydia trachomatis (50%)
2 2645 bp 57.62 6.01 87.79
NECEvent2014_5_2_scaffold_1210 175_001_scaffold_1210
Species: Actinobaculum massiliense (50%)
2 3830 bp 62.35 7.40 75.67
NECEvent2014_5_2_scaffold_1722 175_001_scaffold_1722
Species: Leucobacter sp. UCD-THU (50%)
2 2951 bp 56.22 6.20 81.33
NECEvent2014_5_2_scaffold_2490 175_001_scaffold_2490
Species: Actinomyces georgiae (50%)
2 2223 bp 62.08 5.67 99.87
NECEvent2014_5_2_scaffold_4539 175_001_scaffold_4539
Species: Actinomyces sp. ICM47 (100%)
2 1433 bp 60.64 5.65 89.60
NECEvent2014_5_2_scaffold_7051 175_001_scaffold_7051
Species: Corynebacterium tuberculostearicum (50%)
2 1011 bp 61.33 5.34 79.53
NECEvent2014_5_2_scaffold_6454 175_001_scaffold_6454
Species: Actinomyces sp. oral taxon 180 (50%)
2 1088 bp 56.53 4.41 97.61
NECEvent2014_5_2_scaffold_5175 175_001_scaffold_5175
Species: Actinomyces georgiae (50%)
2 1299 bp 55.27 6.93 68.13
NECEvent2014_5_2_scaffold_2241 175_001_scaffold_2241
Species: Actinomyces sp. S6-Spd3 (50%)
2 2396 bp 59.64 7.39 86.52
NECEvent2014_5_2_scaffold_3009 175_001_scaffold_3009
Species: Actinomyces sp. ICM47 (50%)
2 1931 bp 61.89 7.15 98.65
NECEvent2014_5_2_scaffold_3521 175_001_scaffold_3521
Species: Actinobaculum massiliense (50%)
2 1728 bp 55.27 5.90 94.79
NECEvent2014_5_2_scaffold_3011 175_001_scaffold_3011
Species: Corynebacterium sp. ATCC 6931 (50%)
2 1929 bp 54.85 6.45 99.22
NECEvent2014_5_2_scaffold_1221 175_001_scaffold_1221
Species: BJP_08E140C01_Actinomycetales_67_18 (50%)
2 3796 bp 60.17 7.43 78.16
NECEvent2014_5_2_scaffold_6975 175_001_scaffold_6975
Species: Propionibacterium sp. KPL1852 (50%)
2 1019 bp 60.16 7.21 93.33
NECEvent2014_5_2_scaffold_4040 175_001_scaffold_4040
Species: Actinomyces sp. oral taxon 181 (50%)
2 1565 bp 58.40 8.34 99.30
NECEvent2014_5_2_scaffold_7064 175_001_scaffold_7064
Species: Propionibacterium sp. KPL1852 (100%)
2 1009 bp 59.37 5.65 59.46
NECEvent2014_5_2_scaffold_2507 175_001_scaffold_2507
Species: Chlamydia trachomatis (50%)
2 2210 bp 61.54 7.60 99.37
NECEvent2014_5_2_scaffold_3019 175_001_scaffold_3019
Species: Trueperella pyogenes (50%)
2 1928 bp 55.50 4.36 91.18
NECEvent2014_5_2_scaffold_1997 175_001_scaffold_1997
Species: Actinomyces coleocanis (50%)
2 2618 bp 61.08 6.82 90.30
NECEvent2014_5_2_scaffold_5190 175_001_scaffold_5190
Species: Beutenbergia cavernae (50%)
2 1296 bp 57.48 5.56 81.71
NECEvent2014_5_2_scaffold_5191 175_001_scaffold_5191
Species: Corynebacterium kroppenstedtii (50%)
2 1296 bp 59.49 9.26 68.52
NECEvent2014_5_2_scaffold_4561 175_001_scaffold_4561
Species: Actinomyces turicensis (50%)
2 1427 bp 57.67 8.30 74.84
NECEvent2014_5_2_scaffold_3795 175_001_scaffold_3795
Species: Chlamydia trachomatis (50%)
2 1640 bp 59.70 5.30 96.95
NECEvent2014_5_2_scaffold_6732 175_001_scaffold_6732
Species: Propionibacterium freudenreichii (50%)
2 1050 bp 56.19 7.14 74.00
NECEvent2014_5_2_scaffold_5454 175_001_scaffold_5454
Species: Actinomyces sp. ICM54 (50%)
2 1250 bp 59.20 6.96 96.48
Displaying items 401-450 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.