ggKbase home page
Advanced Search
Search Help

NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 351-400 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4467 175_001_scaffold_4467
Genus: Actinomyces (66.67%)
3 1449 bp 61.49 5.38 98.55
NECEvent2014_5_2_scaffold_3956 175_001_scaffold_3956
Species: Actinomyces turicensis (66.67%)
3 1588 bp 62.15 7.18 99.56
NECEvent2014_5_2_scaffold_2166 175_001_scaffold_2166
Genus: Actinomyces (66.67%)
3 2461 bp 59.77 6.22 94.60
NECEvent2014_5_2_scaffold_5105 175_001_scaffold_5105
Order: Actinomycetales (100%)
3 1313 bp 57.04 5.26 69.46
NECEvent2014_5_2_scaffold_6386 175_001_scaffold_6386
Domain: Bacteria (66.67%)
3 1096 bp 57.12 6.02 96.90
NECEvent2014_5_2_scaffold_2429 175_001_scaffold_2429
Genus: Actinomyces (100%)
3 2254 bp 60.07 7.19 67.21
NECEvent2014_5_2_scaffold_2174 175_001_scaffold_2174
Class: Actinobacteria (66.67%)
3 2451 bp 58.14 6.85 76.25
NECEvent2014_5_2_scaffold_2436 175_001_scaffold_2436
Order: Micrococcales (66.67%)
3 2250 bp 58.04 8.00 99.07
NECEvent2014_5_2_scaffold_1669 175_001_scaffold_1669
Genus: Actinomyces (66.67%)
3 3028 bp 59.31 6.98 90.75
NECEvent2014_5_2_scaffold_2183 175_001_scaffold_2183
Genus: Actinomyces (66.67%)
3 2442 bp 60.32 8.48 67.20
NECEvent2014_5_2_scaffold_2696 175_001_scaffold_2696
Species: Actinomyces cardiffensis (66.67%)
3 2808 bp 60.79 6.62 99.36
NECEvent2014_5_2_scaffold_3465 175_001_scaffold_3465
Species: Actinomyces sp. ICM54 (50%)
2 1751 bp 60.31 4.97 102.11
NECEvent2014_5_2_scaffold_2698 175_001_scaffold_2698
Species: Propionimicrobium lymphophilum (50%)
2 2100 bp 59.81 5.79 90.57
NECEvent2014_5_2_scaffold_3979 175_001_scaffold_3979
Species: Chlamydia trachomatis (50%)
2 1581 bp 63.31 6.64 99.05
NECEvent2014_5_2_scaffold_4235 175_001_scaffold_4235
Species: Actinomyces sp. ICM39 (50%)
2 1509 bp 60.04 5.17 100.20
NECEvent2014_5_2_scaffold_2188 175_001_scaffold_2188
Species: Propionibacterium sp. KPL2005 (100%)
2 2437 bp 51.05 4.86 52.44
NECEvent2014_5_2_scaffold_7004 175_001_scaffold_7004
Species: Actinomyces georgiae (50%)
2 1016 bp 60.14 5.31 100.10
NECEvent2014_5_2_scaffold_5380 175_001_scaffold_5380
Species: Actinomyces sp. oral taxon 180 (50%)
2 1259 bp 62.19 7.51 96.27
NECEvent2014_5_2_scaffold_4237 175_001_scaffold_4237
Species: Actinomyces sp. S6-Spd3 (50%)
2 1509 bp 59.38 6.36 91.65
NECEvent2014_5_2_scaffold_1678 175_001_scaffold_1678
Species: Chlamydia trachomatis (50%)
2 3013 bp 59.11 6.72 80.95
NECEvent2014_5_2_scaffold_7006 175_001_scaffold_7006
Species: Actinomyces sp. ICM39 (50%)
2 1016 bp 60.33 5.46 98.03
NECEvent2014_5_2_scaffold_3727 175_001_scaffold_3727
Species: Actinomyces sp. HPA0247 (50%)
2 1660 bp 58.19 6.33 88.73
NECEvent2014_5_2_scaffold_6663 175_001_scaffold_6663
Species: Actinomyces sp. S6-Spd3 (50%)
2 1059 bp 61.57 6.94 93.48
NECEvent2014_5_2_scaffold_1936 175_001_scaffold_1936
Species: Actinomyces neuii (50%)
2 2685 bp 61.27 6.87 99.55
NECEvent2014_5_2_scaffold_3728 175_001_scaffold_3728
Species: Propionibacterium sp. HGH0353 (50%)
2 1660 bp 67.35 7.68 100.12
NECEvent2014_5_2_scaffold_2449 175_001_scaffold_2449
Species: Actinomyces sp. S6-Spd3 (50%)
2 2243 bp 61.08 5.62 98.97
NECEvent2014_5_2_scaffold_4497 175_001_scaffold_4497
Species: Beutenbergia cavernae (50%)
2 1443 bp 57.45 6.86 95.84
NECEvent2014_5_2_scaffold_4498 175_001_scaffold_4498
Species: Varibaculum cambriense (100%)
2 1443 bp 57.59 7.80 99.38
NECEvent2014_5_2_scaffold_1171 175_001_scaffold_1171
Species: Actinomyces sp. S6-Spd3 (50%)
2 3932 bp 57.63 7.10 78.59
NECEvent2014_5_2_scaffold_3475 175_001_scaffold_3475
Species: Gordonia polyisoprenivorans (50%)
2 1746 bp 61.34 4.47 100.00
NECEvent2014_5_2_scaffold_2196 175_001_scaffold_2196
Species: Actinomyces cardiffensis (50%)
2 2433 bp 60.67 7.52 98.03
NECEvent2014_5_2_scaffold_3989 175_001_scaffold_3989
Species: Actinomyces neuii (50%)
2 1577 bp 58.47 7.04 86.37
NECEvent2014_5_2_scaffold_2967 175_001_scaffold_2967
Species: Actinomyces cardiffensis (50%)
2 1953 bp 62.98 6.53 97.85
NECEvent2014_5_2_scaffold_2968 175_001_scaffold_2968
Species: Actinomyces sp. oral taxon 877 (50%)
2 1951 bp 62.79 4.61 100.10
NECEvent2014_5_2_scaffold_5392 175_001_scaffold_5392
Species: Actinomyces sp. oral taxon 178 (50%)
2 1257 bp 56.80 5.25 102.63
NECEvent2014_5_2_scaffold_5648 175_001_scaffold_5648
Species: Actinomyces georgiae (50%)
2 1216 bp 55.59 5.80 25.90
NECEvent2014_5_2_scaffold_1945 175_001_scaffold_1945
Species: Actinomyces turicensis (50%)
2 2677 bp 61.82 7.06 88.87
NECEvent2014_5_2_scaffold_2713 175_001_scaffold_2713
Species: Propionibacterium sp. KPL1838 (50%)
2 2091 bp 60.88 5.81 49.93
NECEvent2014_5_2_scaffold_4761 175_001_scaffold_4761
Species: Actinomyces sp. S6-Spd3 (50%)
2 1384 bp 57.66 5.74 47.90
NECEvent2014_5_2_scaffold_6673 175_001_scaffold_6673
Species: Mobiluncus curtisii (50%)
2 1058 bp 58.70 5.39 69.47
NECEvent2014_5_2_scaffold_3994 175_001_scaffold_3994
Species: Mobiluncus curtisii (100%)
2 1576 bp 53.30 6.38 95.75
NECEvent2014_5_2_scaffold_4763 175_001_scaffold_4763
Species: Actinomyces cardiffensis (50%)
2 1383 bp 59.07 5.31 90.89
NECEvent2014_5_2_scaffold_6675 175_001_scaffold_6675
Species: Corynebacterium tuscaniense (50%)
2 1058 bp 56.52 6.52 98.39
NECEvent2014_5_2_scaffold_3997 175_001_scaffold_3997
Species: Actinomyces sp. S4-C9 (50%)
2 1575 bp 62.92 8.57 90.67
NECEvent2014_5_2_scaffold_3230 175_001_scaffold_3230
Species: Actinomyces turicensis (50%)
2 1839 bp 59.16 7.18 93.47
NECEvent2014_5_2_scaffold_4510 175_001_scaffold_4510
Species: Actinomyces sp. S6-Spd3 (50%)
2 1439 bp 61.22 5.94 98.82
NECEvent2014_5_2_scaffold_5398 175_001_scaffold_5398
Species: Propionibacterium acidipropionici (100%)
2 1257 bp 58.87 5.85 100.72
NECEvent2014_5_2_scaffold_3743 175_001_scaffold_3743
Species: Corynebacterium tuscaniense (100%)
2 1655 bp 53.23 6.80 100.06
NECEvent2014_5_2_scaffold_6167 175_001_scaffold_6167
Species: Mobiluncus mulieris (100%)
2 1131 bp 47.21 5.97 96.29
NECEvent2014_5_2_scaffold_2465 175_001_scaffold_2465
Species: Actinomyces cardiffensis (50%)
2 2235 bp 60.45 7.18 100.54
Displaying items 351-400 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.