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NECEvent2014_5_2_scaffold_124

Alias: 175_001_scaffold_124

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_2_scaffold_124_trna_1
unknown

Not on your lists

108..180
DNA (73bp)
transferRNA
NECEvent2014_5_2_scaffold_124_1
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(541..2214)
DNA (1674bp) protein (558aa)
Putative alkyl hydroperoxide reductase F subunit n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FJI7_9CLOT rbh
Putative alkyl hydroperoxide reductase F subunit {ECO:0000313|EMBL:CDG00839.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi
pyridine nucleotide-disulfide oxidoreductase
NECEvent2014_5_2_scaffold_124_2
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2322..2885)
DNA (564bp) protein (188aa)
ahpC; Alkyl hydroperoxide reductase subunit C (EC:1.11.1.15)
Putative Peroxiredoxin n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ENI5_9CLOT rbh
Putative Peroxiredoxin {ECO:0000313|EMBL:CDG00840.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
NECEvent2014_5_2_scaffold_124_3
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3101..3454
DNA (354bp) protein (118aa)
ArsC family protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6GP15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ85297.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
NECEvent2014_5_2_scaffold_124_4
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3463..4230
DNA (768bp) protein (256aa)
UPF0246 protein Ftrac_0723 n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TRX4_MARTH
hypothetical protein
UPF0246 protein Ftrac_0723 {ECO:0000256|HAMAP-Rule:MF_00652}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strai
NECEvent2014_5_2_scaffold_124_5
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4243..4629
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CDA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR27253.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_5_2_scaffold_124_6
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4689..5489)
DNA (801bp) protein (267aa)
Helix-turn-helix domain, rpiR family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VD16_CLOBI rbh
Helix-turn-helix domain, rpiR family protein {ECO:0000313|EMBL:EQK38626.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[
RpiR family phosphosugar-binding transcriptional regulator
NECEvent2014_5_2_scaffold_124_7
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5597..6241)
DNA (645bp) protein (215aa)
Putative N-acetylmannosamine-6-phosphate 2-epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; EC=5.1.3.9 {ECO:0000256|HAMAP-Rule:MF_01235};; ManNAc-6-P epimerase {ECO:0000256|HAMAP-Rule:MF_01235}; TaxID=123
N-acylglucosamine-6-phosphate 2-epimerase (EC:5.1.3.9)
Glycerol-3-phosphate responsive antiterminator family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VBX6_CLOBI rbh
NECEvent2014_5_2_scaffold_124_8
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6261..7751)
DNA (1491bp) protein (497aa)
PTS system, glucose-like IIB component domain protein {ECO:0000313|EMBL:EQK38624.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EQK38624.1};; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
PTS system, glucose-like IIB component domain protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4V4I6_CLOBI rbh
PTS system IIB component, Glc family
NECEvent2014_5_2_scaffold_124_9
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7989..9794)
DNA (1806bp) protein (602aa)
CotH protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KJ49_9FIRM rbh
CotH protein
CotH protein {ECO:0000313|EMBL:AGL00520.1}; Flags: Precursor;; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibso
NECEvent2014_5_2_scaffold_124_10
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9858..10544)
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AUY4_SYNWW rbh
Uncharacterized protein {ECO:0000313|EMBL:KIE46339.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.
hypothetical protein
NECEvent2014_5_2_scaffold_124_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10559..11242)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1BTM2_CLOPF
HesA/MoeB/ThiF family protein {ECO:0000313|EMBL:EDT72067.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str
hypothetical protein
NECEvent2014_5_2_scaffold_124_12
Bacillus sonorensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11482..12315
DNA (834bp) protein (278aa)
Transcriptional antiterminator LicT n=1 Tax=Bacillus sonorensis L12 RepID=M5PDG1_9BACI rbh
Transcriptional antiterminator LicT {ECO:0000313|EMBL:EME73752.1}; TaxID=1274524 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sonorensis L12.;"
licT; transcriptional antiterminator (BglG family) protein
NECEvent2014_5_2_scaffold_124_13
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12513..14369
DNA (1857bp) protein (619aa)
bglP; PTS system beta-glucoside-specific EIIBCA component (EC:2.7.1.69)
PTS system beta-glucoside-specific EIIBCA component {ECO:0000313|EMBL:CDM68914.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDM68914.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; C
PTS system beta-glucoside-specific EIIBCA component BglP n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N256_9CLOT rbh
NECEvent2014_5_2_scaffold_124_14
Cetobacterium somerae, Cetobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

14388..15818
DNA (1431bp) protein (477aa)
Aryl-phospho-beta-D-glucosidase BglH n=1 Tax=Cetobacterium somerae ATCC BAA-474 RepID=U7V617_9FUSO rbh
Aryl-phospho-beta-D-glucosidase BglH {ECO:0000313|EMBL:ERT66981.1}; TaxID=1319815 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Cetobacterium.;" source="Cetobacterium somerae ATC
glycoside hydrolase family 1
NECEvent2014_5_2_scaffold_124_15
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15954..16637
DNA (684bp) protein (228aa)
DNA-binding response regulator in two-component regulatory system with CusS n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LR17_TEPAE
Transcriptional regulator {ECO:0000313|EMBL:KJF27732.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
winged helix family two component transcriptional regulator
NECEvent2014_5_2_scaffold_124_16
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16640..17863
DNA (1224bp) protein (408aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AUY7_SYNWW rbh
hypothetical protein
NECEvent2014_5_2_scaffold_124_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18086..18895
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGF6_9CLOT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM68170.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_5_2_scaffold_124_18
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19176..19937
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HF46_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98460.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_5_2_scaffold_124_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20257..21621
DNA (1365bp) protein (455aa)
Radical SAM domain protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M0Y7_CLOB8 rbh
Radical SAM protein {ECO:0000313|EMBL:KJU71063.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
radical SAM additional 4Fe4S-binding SPASM domain protein
NECEvent2014_5_2_scaffold_124_20
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21632..22858
DNA (1227bp) protein (409aa)
Putative Zn-dependent peptidase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MKR4_9CLOT rbh
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AGF55406.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbuty
NECEvent2014_5_2_scaffold_124_21
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22851..24266
DNA (1416bp) protein (472aa)
Orn/Lys/Arg decarboxylase, major domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q4G6_9CLOT rbh
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:EKY22507.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
arginine/lysine decarboxylase
NECEvent2014_5_2_scaffold_124_22
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24546..25400
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPN9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EET88769.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
hypothetical protein
NECEvent2014_5_2_scaffold_124_23
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25504..26229
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QF75_9CLOT rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CDM70349.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_5_2_scaffold_124_24
Bacillus thuringiensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26385..27185
DNA (801bp) protein (267aa)
Transcriptional regulator, MerR family n=2 Tax=Bacillus cereus group RepID=A0RG19_BACAH
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABK86162.1}; TaxID=412694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus
NECEvent2014_5_2_scaffold_124_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27305..28237
DNA (933bp) protein (311aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U598_9CLOT rbh
Antibiotic ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHD14715.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bu
ABC-type MDR transport system, ATPase component
NECEvent2014_5_2_scaffold_124_26
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28247..28984
DNA (738bp) protein (246aa)
ABC transporter permease n=1 Tax=Clostridium arbusti RepID=UPI00028975E2
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM
hypothetical protein
NECEvent2014_5_2_scaffold_124_27
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28998..29981
DNA (984bp) protein (328aa)
ABC-type multidrug transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FID0_9CLOT
ABC-2 type transporter family protein {ECO:0000313|EMBL:KIE45588.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentin
ABC-type multidrug transport system, permease component
NECEvent2014_5_2_scaffold_124_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30102..30998)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BL09_CLOPF rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDS79439.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
LysR family transcriptional regulator
Displaying 29 items

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