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NECEvent2014_5_3_scaffold_7

Alias: 175_002_scaffold_7

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_7_1
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23..388
DNA (366bp) protein (122aa)
UPF0102 protein BN542_01741 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWV2_9CLOT
UPF0102 protein BN542_01741 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clo
hypothetical protein
NECEvent2014_5_3_scaffold_7_2
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(444..1250)
DNA (807bp) protein (269aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CDH6_9CLOT rbh
NECEvent2014_5_3_scaffold_7_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1267..2109)
DNA (843bp) protein (281aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QG79_9CLOT rbh
ylqF; ribosome biogenesis GTP-binding protein YlqF
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_5_3_scaffold_7_4
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2191..2538)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Clostridium colicanis 209318 RepID=N9WFD1_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplS; ribosomal protein L19
NECEvent2014_5_3_scaffold_7_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2659..3375)
DNA (717bp) protein (239aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPJ2_CLOSA rbh
NECEvent2014_5_3_scaffold_7_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3365..3862)
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MFD3_9CLOT
rimM; 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_5_3_scaffold_7_7
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3921..4148)
DNA (228bp) protein (76aa)
UPF0109 protein BN906_01342 n=1 Tax=Clostridium tetani 12124569 RepID=U6EXE2_CLOTA
nucleic acid binding protein, containing KHdomain
UPF0109 protein BN906_01342 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 1212456
NECEvent2014_5_3_scaffold_7_8
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4195..4440)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Clostridium RepID=R9CEI1_9CLOT
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_5_3_scaffold_7_9
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4477..5832)
DNA (1356bp) protein (452aa)
Signal recognition particle protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFC7_9CLOT rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clos
ffh; signal recognition particle protein
NECEvent2014_5_3_scaffold_7_10
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5852..6181)
DNA (330bp) protein (110aa)
UPF0122 protein CCH01_008870 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EQU2_9CLOT
UPF0122 protein CCH01_008870 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF43
hypothetical protein
NECEvent2014_5_3_scaffold_7_11
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6263..7174)
DNA (912bp) protein (304aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0V3_9CLOT rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiale
ftsY; signal recognition particle-docking protein FtsY
NECEvent2014_5_3_scaffold_7_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7192..10746)
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRZ4_CLOSA rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharob
smc; chromosome partition protein Smc
NECEvent2014_5_3_scaffold_7_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10982..11980)
DNA (999bp) protein (333aa)
radical SAM protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030026B5 rbh
Radical SAM domain-containing protein {ECO:0000313|EMBL:AJG97909.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerincki
radical SAM domain-containing protein
NECEvent2014_5_3_scaffold_7_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11973..12671)
DNA (699bp) protein (233aa)
rnc; ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
UPI0003D689CA related cluster n=1 Tax=unknown RepID=UPI0003D689CA rbh
NECEvent2014_5_3_scaffold_7_15
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12770..13000)
DNA (231bp) protein (77aa)
Acyl carrier protein n=4 Tax=Clostridium RepID=A6LSM1_CLOB8
acpP; acyl carrier protein AcpP
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridial
NECEvent2014_5_3_scaffold_7_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13085..14083)
DNA (999bp) protein (333aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase
Phosphate acyltransferase n=4 Tax=Clostridium butyricum RepID=B1QU29_CLOBU rbh
plsX; fatty acid/phospholipid synthesis protein PlsX
NECEvent2014_5_3_scaffold_7_17
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14139..14321)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1R7_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.
rpmF; ribosomal protein L32
NECEvent2014_5_3_scaffold_7_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14324..14833)
DNA (510bp) protein (170aa)
Putative metal-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPN0_9CLOT
Putative metal-binding protein {ECO:0000313|EMBL:EKQ53985.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley
hypothetical protein
NECEvent2014_5_3_scaffold_7_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14931..16127)
DNA (1197bp) protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Cl
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ39_9CLOT
NECEvent2014_5_3_scaffold_7_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16155..17156)
DNA (1002bp) protein (334aa)
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase {ECO:0000313|EMBL:AIY84987.1}; EC=2.3.1.8 {ECO:0000313|EMBL:AIY84987.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
Phosphate acetyltransferase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0U5_9CLOT rbh
NECEvent2014_5_3_scaffold_7_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17371..18582
DNA (1212bp) protein (404aa)
UPF0348 protein CLL_A1233 n=2 Tax=Clostridium botulinum B RepID=B2TJ15_CLOBB rbh
UPF0348 protein UC77_10320 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
HIGH Nucleotidyl Transferase family protein
NECEvent2014_5_3_scaffold_7_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18633..19808
DNA (1176bp) protein (392aa)
Sporulation integral membrane protein YlbJ n=2 Tax=Clostridium botulinum B RepID=B2TJ14_CLOBB rbh
ylbJ; sporulation integral membrane protein YlbJ
Putative membrane protein {ECO:0000313|EMBL:CDH90150.1}; Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:ACD24685.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales
NECEvent2014_5_3_scaffold_7_23
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19788..20333)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TPN4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ53990.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-2
hypothetical protein
NECEvent2014_5_3_scaffold_7_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20347..20871)
DNA (525bp) protein (175aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=2 Tax=Clostridium botulinum E RepID=COAD_CLOBA
NECEvent2014_5_3_scaffold_7_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20837..21385)
DNA (549bp) protein (183aa)
RsmD family RNA methyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEP6_9CLOT rbh
RsmD family RNA methyltransferase {ECO:0000313|EMBL:EEH98179.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA
RNA methyltransferase, RsmD family
NECEvent2014_5_3_scaffold_7_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21452..23488)
DNA (2037bp) protein (679aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.4.12)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H411_9CLOT rbh
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:KJU71340.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_5_3_scaffold_7_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23542..25191)
DNA (1650bp) protein (550aa)
DAK2 domain fusion protein YloV n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1R0_9CLOT rbh
DAK2 domain fusion YloV family protein
DAK2 domain fusion YloV family protein {ECO:0000313|EMBL:AIY82303.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii
NECEvent2014_5_3_scaffold_7_28
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25203..25553)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01746.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
NECEvent2014_5_3_scaffold_7_29
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25751..25942
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=3 Tax=Clostridium RepID=R9CEJ6_9CLOT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU
rpmB; 50S ribosomal protein L28
NECEvent2014_5_3_scaffold_7_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26216..26851)
DNA (636bp) protein (212aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:AIY83305.1}; EC=2.7.6.2 {ECO:0000313|EMBL:AIY83305.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
Thiamine pyrophosphokinase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G5X5_CLOPA
Displaying items 1-30 of 142 in total

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