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NECEvent2014_5_3_scaffold_400

Alias: 175_002_scaffold_400

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_400_1
Staphylococcus warneri, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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2..3100
DNA (3099bp) protein (1033aa)
GA module (Fragment) n=1 Tax=Staphylococcus epidermidis VCU126 RepID=H3W953_STAEP rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC90611.1}; TaxID=1194526 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus warneri (strain SG1).;"
NECEvent2014_5_3_scaffold_400_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3272..3667)
DNA (396bp) protein (132aa)
Cell wall enzyme EbsB, putative n=37 Tax=Staphylococcus epidermidis RepID=Q5HPA3_STAEQ
cell wall enzyme EbsB
Cell wall enzyme EbsB, putative {ECO:0000313|EMBL:AAW54379.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984
NECEvent2014_5_3_scaffold_400_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3992..4696)
DNA (705bp) protein (235aa)
Membrane protein, putative n=52 Tax=Staphylococcus epidermidis RepID=Q5HPA4_STAEQ rbh
Putative preQ0 transporter
Putative membrane protein {ECO:0000313|EMBL:EFE59730.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_400_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4947..5141
DNA (195bp) protein (65aa)
Uncharacterized protein n=41 Tax=Staphylococcus epidermidis RepID=Q5HPA5_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE59731.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_5_3_scaffold_400_5

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5153..5413
DNA (261bp) protein (87aa)
Uncharacterized protein n=77 Tax=Staphylococcus epidermidis RepID=Q5HPA6_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18883.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_400_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5462..5902
DNA (441bp) protein (147aa)
PF06491 family protein n=5 Tax=Staphylococcus epidermidis RepID=H3V7M4_STAEP
Uncharacterized protein {ECO:0000313|EMBL:EFE59733.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
hypothetical protein
NECEvent2014_5_3_scaffold_400_7

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6113..7162
DNA (1050bp) protein (350aa)
Efflux ABC transporter, permease protein n=8 Tax=Staphylococcus epidermidis RepID=H3UHT1_STAEP rbh
ABC transporter permease protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18881.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_5_3_scaffold_400_8

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7178..7840
DNA (663bp) protein (221aa)
ABC transporter, ATP-binding protein n=25 Tax=Staphylococcus epidermidis RepID=C5Q969_STAEP rbh
ABC transporter family protein
ABC superfamily ATP binding cassette transporter, binding protein {ECO:0000313|EMBL:ETJ18880.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut
NECEvent2014_5_3_scaffold_400_9
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8154..9110
DNA (957bp) protein (319aa)
thyA; thymidylate synthase (EC:2.1.1.45) rbh
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:000
Thymidylate synthase n=141 Tax=Bacilli RepID=TYSY_STAEQ rbh
NECEvent2014_5_3_scaffold_400_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9152..9637
DNA (486bp) protein (162aa)
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase; Short=DHFR;; EC=1.5.1.3;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Dihydrofolate reductase n=44 Tax=Bacillales RepID=DYR_STAEQ rbh
NECEvent2014_5_3_scaffold_400_11
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9647..10495
DNA (849bp) protein (283aa)
EDD domain protein, DegV family n=9 Tax=Staphylococcus epidermidis RepID=F9LLW0_STAEP rbh
Hypothetical protein DUF194, DegV family
DegV family protein family protein {ECO:0000313|EMBL:ETJ10046.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
NECEvent2014_5_3_scaffold_400_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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10598..11125
DNA (528bp) protein (176aa)
msrA2; peptide methionine sulfoxide reductase MsrA 2 (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=3 Tax=Staphylococcus epidermidis RepID=H0DMH4_STAEP rbh
NECEvent2014_5_3_scaffold_400_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11118..11546
DNA (429bp) protein (143aa)
msrB; methionine sulfoxide reductase B (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB {ECO:0000255|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000255|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000255|HAMAP-Rule:MF_01400
Peptide methionine sulfoxide reductase MsrB n=51 Tax=Staphylococcus RepID=MSRB_STAEQ rbh
NECEvent2014_5_3_scaffold_400_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11559..12059
DNA (501bp) protein (167aa)
PTS system, glucose-specific IIA component (EC:2.7.1.69)
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EFE59742.1}; EC=2.7.1.- {ECO:0000313|EMBL:EFE59742.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;
Glucose-specific phosphotransferase enzyme IIA component n=56 Tax=Staphylococcus RepID=PTGA_STAEQ rbh
NECEvent2014_5_3_scaffold_400_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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12059..12229
DNA (171bp) protein (57aa)
UPF0346 protein SEVCU144_0414 n=1 Tax=Staphylococcus epidermidis VCU144 RepID=F3SV43_STAEP
hypothetical protein
UPF0346 protein HMPREF0791_1234 {ECO:0000256|HAMAP-Rule:MF_01538}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Displaying 15 items

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