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NECEvent2014_5_6_scaffold_334

Alias: 175_005_scaffold_334

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_6_scaffold_334_1
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3..179
DNA (177bp) protein (59aa)
Site-specific recombinase, phage integrase family n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UTA2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ERT61668.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Me
phage integrase family protein
NECEvent2014_5_6_scaffold_334_trna_1
unknown

Not on your lists

comp(314..385)
DNA (72bp)
transferRNA
NECEvent2014_5_6_scaffold_334_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(552..890)
DNA (339bp) protein (113aa)
UPI0003D65EF1 related cluster n=1 Tax=unknown RepID=UPI0003D65EF1
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
50S ribosomal protein L17
NECEvent2014_5_6_scaffold_334_3
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(903..1883)
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
UPI0003D5B69C related cluster n=1 Tax=unknown RepID=UPI0003D5B69C rbh
DNA-directed RNA polymerase subunit alpha
NECEvent2014_5_6_scaffold_334_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1930..2313)
DNA (384bp) protein (128aa)
UPI0003D5E317 related cluster n=1 Tax=unknown RepID=UPI0003D5E317
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales ba
30S ribosomal protein S11
NECEvent2014_5_6_scaffold_334_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(2336..2701)
DNA (366bp) protein (122aa)
UPI0003D5C6DB related cluster n=1 Tax=unknown RepID=UPI0003D5C6DB
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succ
30S ribosomal protein S13
NECEvent2014_5_6_scaffold_334_6
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2722..2835)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=4 Tax=Finegoldia magna RepID=D6S9Z6_FINMA
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Se
rpmJ; 50S ribosomal protein L36
NECEvent2014_5_6_scaffold_334_7
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2859..3077)
DNA (219bp) protein (73aa)
UPI0003D65E07 related cluster n=1 Tax=unknown RepID=UPI0003D65E07
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostri
translation initiation factor IF-1
NECEvent2014_5_6_scaffold_334_8
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3055..3375)
DNA (321bp) protein (107aa)
UPI0003D5A78A related cluster n=1 Tax=unknown RepID=UPI0003D5A78A
Uncharacterized protein {ECO:0000313|EMBL:KGF09480.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacteriu
ribosomal protein L14E
NECEvent2014_5_6_scaffold_334_9
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3372..4124)
DNA (753bp) protein (251aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
UPI0003D5F5E6 related cluster n=1 Tax=unknown RepID=UPI0003D5F5E6 rbh
methionine aminopeptidase
NECEvent2014_5_6_scaffold_334_10
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4121..4777)
DNA (657bp) protein (219aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS000796
UPI0003D5BC5F related cluster n=1 Tax=unknown RepID=UPI0003D5BC5F rbh
adenylate kinase
NECEvent2014_5_6_scaffold_334_11
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4791..6053)
DNA (1263bp) protein (421aa)
UPI0003D659FD related cluster n=1 Tax=unknown RepID=UPI0003D659FD rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Ince
preprotein translocase subunit SecY
NECEvent2014_5_6_scaffold_334_12
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(6053..6493)
DNA (441bp) protein (147aa)
UPI0003D5F830 related cluster n=1 Tax=unknown RepID=UPI0003D5F830
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
ribosomal protein L15
NECEvent2014_5_6_scaffold_334_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6506..6691)
DNA (186bp) protein (62aa)
UPI0003D5B712 related cluster n=1 Tax=unknown RepID=UPI0003D5B712
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Se
50S ribosomal protein L30
NECEvent2014_5_6_scaffold_334_14
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(6703..7203)
DNA (501bp) protein (167aa)
UPI0003D63824 related cluster n=1 Tax=unknown RepID=UPI0003D63824 rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succi
30S ribosomal protein S5
NECEvent2014_5_6_scaffold_334_15
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(7223..7588)
DNA (366bp) protein (122aa)
UPI0003D684EF related cluster n=1 Tax=unknown RepID=UPI0003D684EF
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succ
50S ribosomal protein L18
NECEvent2014_5_6_scaffold_334_16
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7609..8148)
DNA (540bp) protein (180aa)
UPI0003D650D6 related cluster n=1 Tax=unknown RepID=UPI0003D650D6 rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sed
50S ribosomal protein L6P
NECEvent2014_5_6_scaffold_334_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(8164..8562)
DNA (399bp) protein (133aa)
UPI0003D68780 related cluster n=1 Tax=unknown RepID=UPI0003D68780
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succi
30S ribosomal protein S8
NECEvent2014_5_6_scaffold_334_18
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8592..8861)
DNA (270bp) protein (90aa)
UPI0003D64F64 related cluster n=1 Tax=unknown RepID=UPI0003D64F64
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales ba
30S ribosomal protein S14
NECEvent2014_5_6_scaffold_334_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8880..9419)
DNA (540bp) protein (180aa)
UPI0003D60B0B related cluster n=1 Tax=unknown RepID=UPI0003D60B0B rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bac
50S ribosomal protein L5
NECEvent2014_5_6_scaffold_334_20
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(9441..9776)
DNA (336bp) protein (112aa)
UPI0003D5D1D3 related cluster n=1 Tax=unknown RepID=UPI0003D5D1D3
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succ
50S ribosomal protein L24
NECEvent2014_5_6_scaffold_334_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(9789..10157)
DNA (369bp) protein (123aa)
UPI0003D60822 related cluster n=1 Tax=unknown RepID=UPI0003D60822
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
rplN; 50S ribosomal protein L14
NECEvent2014_5_6_scaffold_334_22
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10182..10442)
DNA (261bp) protein (87aa)
UPI0003D6277C related cluster n=1 Tax=unknown RepID=UPI0003D6277C
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
30S ribosomal protein S17
NECEvent2014_5_6_scaffold_334_23
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10460..10660)
DNA (201bp) protein (67aa)
UPI0003D62C56 related cluster n=1 Tax=unknown RepID=UPI0003D62C56
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succ
ribosomal protein L29
NECEvent2014_5_6_scaffold_334_24
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(10660..11091)
DNA (432bp) protein (144aa)
UPI0003D5934F related cluster n=1 Tax=unknown RepID=UPI0003D5934F
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
rplP; putative 50S ribosomal protein L16
NECEvent2014_5_6_scaffold_334_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(11091..11885)
DNA (795bp) protein (265aa)
UPI0003D67B02 related cluster n=1 Tax=unknown RepID=UPI0003D67B02 rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succi
30S ribosomal protein S3
NECEvent2014_5_6_scaffold_334_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(11900..12235)
DNA (336bp) protein (112aa)
UPI0003D5EC00 related cluster n=1 Tax=unknown RepID=UPI0003D5EC00
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
ribosomal protein L22
NECEvent2014_5_6_scaffold_334_27
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12246..12527)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 n=1 Tax=Anaeroglobus geminatus F0357 RepID=G9YKI4_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales ba
30S ribosomal protein S19
NECEvent2014_5_6_scaffold_334_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(12549..13376)
DNA (828bp) protein (276aa)
UPI0003D69862 related cluster n=1 Tax=unknown RepID=UPI0003D69862 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succi
50S ribosomal protein L2
NECEvent2014_5_6_scaffold_334_29
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(13402..13686)
DNA (285bp) protein (95aa)
UPI0003D59656 related cluster n=1 Tax=unknown RepID=UPI0003D59656
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus
ribosomal protein L25/L23
Displaying items 1-30 of 34 in total

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