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NECEvent2014_5_7_scaffold_342

Alias: 175_006_scaffold_342

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_7_scaffold_342_trna_1
unknown

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10..95
DNA (86bp)
transferRNA
NECEvent2014_5_7_scaffold_342_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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422..2812
DNA (2391bp) protein (797aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E {ECO:0000313|EMBL:EDT14430.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EDT14430.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
Stage II sporulation protein E n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TMH9_CLOP1 rbh
NECEvent2014_5_7_scaffold_342_2
unknown

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2980..3075
DNA (96bp) protein (32aa)

This feature has no annotations

NECEvent2014_5_7_scaffold_342_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3029..4438
DNA (1410bp) protein (470aa)
tilS; tRNA(Ile)-lysidine synthetase (EC:6.-.-.-)
tRNA(Ile)-lysidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000255|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000255|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=TILS_CLOPE rbh
NECEvent2014_5_7_scaffold_342_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4441..4992
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EDT14427.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EDT14427.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Hypoxanthine phosphoribosyltransferase n=5 Tax=Clostridium perfringens RepID=H7CZH6_CLOPF rbh
hprT; hypoxanthine phosphoribosyltransferase
NECEvent2014_5_7_scaffold_342_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5067..6872
DNA (1806bp) protein (602aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVE8_CLOPF rbh
ftsH; ATP-dependent metalloprotease FtsH
NECEvent2014_5_7_scaffold_342_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7074..8744
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=451754 spe
Formate--tetrahydrofolate ligase n=6 Tax=Clostridium perfringens RepID=FTHS_CLOPE rbh
formate--tetrahydrofolate ligase
NECEvent2014_5_7_scaffold_342_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8947..9726
DNA (780bp) protein (260aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=10 Tax=Clostridium perfringens RepID=COAX_CLOP1 rbh
NECEvent2014_5_7_scaffold_342_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9733..10713
DNA (981bp) protein (327aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostr
tRNA-dihydrouridine synthase n=10 Tax=Clostridium perfringens RepID=H7CZH2_CLOPF rbh
putative dihydrouridine synthase
NECEvent2014_5_7_scaffold_342_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10992..11468
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=11 Tax=Clostridium perfringens RepID=GREA_CLOP1 rbh
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=883064 species="Bacteria
NECEvent2014_5_7_scaffold_342_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11494..12999
DNA (1506bp) protein (502aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00252}; EC=6.1.1.6 {ECO:0000255|HAMAP-Rule:MF_00252};; Lysyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00252}; Short=LysRS {ECO:0000255|HAMAP-Rule:MF_00
Lysine--tRNA ligase n=5 Tax=Clostridium perfringens RepID=SYK_CLOPE rbh
NECEvent2014_5_7_scaffold_342_trna_2
unknown

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13155..13226
DNA (72bp)
transferRNA
NECEvent2014_5_7_scaffold_342_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13687..15090
DNA (1404bp) protein (468aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
Glycine--tRNA ligase n=10 Tax=Clostridium perfringens RepID=SYG_CLOPE rbh
NECEvent2014_5_7_scaffold_342_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15277..16395
DNA (1119bp) protein (373aa)
Peptidase n=5 Tax=Clostridium perfringens RepID=H7CZG8_CLOPF rbh
pepT; peptidase
Peptidase {ECO:0000313|EMBL:EIA15919.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
NECEvent2014_5_7_scaffold_342_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16569..17438
DNA (870bp) protein (290aa)
LD-carboxypeptidase family protein n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V4P6_CLOPF rbh
LD-carboxypeptidase family protein {ECO:0000313|EMBL:EDT71245.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
mccF; LD-carboxypeptidase
NECEvent2014_5_7_scaffold_342_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17531..18772
DNA (1242bp) protein (414aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CVD9_CLOPF rbh
oxidoreductase
Probable glutamate synthase small chain {ECO:0000313|EMBL:BAB82167.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfrin
NECEvent2014_5_7_scaffold_342_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19014..20057)
DNA (1044bp) protein (348aa)
biotin synthase (EC:2.8.1.6)
Biotin synthase {ECO:0000313|EMBL:EIA15916.1}; EC=2.8.1.6 {ECO:0000313|EMBL:EIA15916.1};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
Radical SAM domain protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RTH6_CLOPF rbh
NECEvent2014_5_7_scaffold_342_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20368..21744
DNA (1377bp) protein (459aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutam
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=2 Tax=Clostridium perfringens RepID=MURD_CLOP1 rbh
Displaying 18 items

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