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NECEvent2014_5_7_scaffold_1508

Alias: 175_006_scaffold_1508

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_7_scaffold_1508_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..76)
DNA (75bp) protein (25aa)
PscK type III export protein n=3 Tax=Pseudomonas aeruginosa RepID=U8Y9J7_PSEAI
type III export protein PscK
PscK type III export protein {ECO:0000313|EMBL:EZO94885.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(85..831)
DNA (747bp) protein (249aa)
PscJ type III export protein n=30 Tax=Pseudomonas aeruginosa RepID=Q02KL4_PSEAB rbh
preproteins translocase J
Preproteins translocase J {ECO:0000313|EMBL:AHB56656.1}; TaxID=1415629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aer
NECEvent2014_5_7_scaffold_1508_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(828..1166)
DNA (339bp) protein (113aa)
Type III export protein PscI n=81 Tax=Pseudomonas RepID=B7VBF7_PSEA8
pscI; type III export protein PscI
Type III export protein PscI {ECO:0000313|EMBL:CDH77956.1}; TaxID=1306165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1166..1597)
DNA (432bp) protein (144aa)
Type III export protein PscH n=33 Tax=Pseudomonas aeruginosa RepID=B7VBF8_PSEA8
Type III secretion effector protein (YopR, encoded by YscH)
Type III export protein PscH {ECO:0000313|EMBL:AHW71808.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1594..1941)
DNA (348bp) protein (116aa)
Type III export protein PscG n=5 Tax=Pseudomonas RepID=A3KST0_PSEAI
pscG; type III export protein PscG
Type III export protein pscG {ECO:0000313|EMBL:ERV78196.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1944..2201)
DNA (258bp) protein (86aa)
Type III export protein PscF n=115 Tax=Pseudomonas RepID=PSCF_PSEAE
Type III secretion cytoplasmic protein (YscF)
Type III export protein pscF {ECO:0000313|EMBL:EZO94890.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2204..2407)
DNA (204bp) protein (68aa)
Type III export protein PscE n=106 Tax=Pseudomonas RepID=B7VBG1_PSEA8
type III export protein pscE
Type III export protein pscE {ECO:0000313|EMBL:ERV78198.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
NECEvent2014_5_7_scaffold_1508_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2370..3668)
DNA (1299bp) protein (433aa)
YscD/HrpQ family type III secretion apparatus protein n=2 Tax=Pseudomonas aeruginosa RepID=U8RI47_PSEAI rbh
Type III secretion inner membrane protein (YscD, flagellar export components) rbh
YscD/HrpQ family type III secretion apparatus protein {ECO:0000313|EMBL:ETU77727.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomona
NECEvent2014_5_7_scaffold_1508_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3670..4419)
DNA (750bp) protein (250aa)
YscC/HrcC family type III secretion outer membrane pore n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P474_PSEAI rbh
type III secretion protein
YscC/HrcC family type III secretion outer membrane pore {ECO:0000313|EMBL:ERV78200.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomo
Displaying 9 items

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