ggKbase home page

NECEvent2014_5_8_Eggerthella_1_3_5FAA-rel_64_6

NECEvent2014_5_8_Eggerthella_64_6
In projects: NECEvent2014_5_8

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

fragments of PC.diff merged with Eggerthella as in other (ESOM supported)

Displaying items 401-450 of 1015 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_8_scaffold_5707 175_008_scaffold_5707
Species: Eggerthella sp. HGA1 (100%)
3 1245 bp 63.61 5.18 86.75
NECEvent2014_5_8_scaffold_6347 175_008_scaffold_6347
Species: Peptoclostridium difficile (50%)
2 1072 bp 65.30 4.76 86.75
NECEvent2014_5_8_scaffold_1993 175_008_scaffold_1993
Species: Eggerthella lenta (50%)
4 4267 bp 63.98 6.75 86.83
NECEvent2014_5_8_scaffold_2123 175_008_scaffold_2123
Species: Eggerthella sp. HGA1 (60%)
5 4034 bp 67.48 6.88 86.86
NECEvent2014_5_8_scaffold_5213 175_008_scaffold_5213
Species: Eggerthella sp. HGA1 (50%)
2 1411 bp 63.08 5.74 86.96
NECEvent2014_5_8_scaffold_3811 175_008_scaffold_3811
Genus: Collinsella (66.67%)
3 2080 bp 65.67 7.79 86.97
NECEvent2014_5_8_scaffold_1230 175_008_scaffold_1230
Genus: Eggerthella (57.14%)
7 6932 bp 63.83 6.21 87.03
NECEvent2014_5_8_scaffold_2214 175_008_scaffold_2214
Species: Eggerthella lenta (66.67%)
3 3852 bp 61.89 6.85 87.15
NECEvent2014_5_8_scaffold_1926 175_008_scaffold_1926
Species: Eggerthella sp. HGA1 (83.33%)
6 4412 bp 55.42 5.92 87.17
NECEvent2014_5_8_scaffold_2899 175_008_scaffold_2899
Species: Eggerthella sp. HGA1 (66.67%)
3 2876 bp 64.95 4.90 87.20
NECEvent2014_5_8_scaffold_1801 175_008_scaffold_1801
Species: Eggerthella sp. HGA1 (100%)
3 4730 bp 68.63 6.22 87.21
NECEvent2014_5_8_scaffold_1858 175_008_scaffold_1858
Species: Eggerthella lenta (66.67%)
6 4574 bp 63.38 6.39 87.23
NECEvent2014_5_8_scaffold_2577 175_008_scaffold_2577
Genus: Eggerthella (66.67%)
3 3221 bp 64.64 6.29 87.27
NECEvent2014_5_8_scaffold_1600 175_008_scaffold_1600
Species: Eggerthella sp. HGA1 (57.14%)
7 5316 bp 67.63 6.49 87.36
NECEvent2014_5_8_scaffold_1387 175_008_scaffold_1387
Species: Eggerthella lenta (66.67%)
6 6164 bp 63.71 6.16 87.36
NECEvent2014_5_8_scaffold_1246 175_008_scaffold_1246
Species: Eggerthella lenta (100%)
4 6819 bp 61.99 6.64 87.37
NECEvent2014_5_8_scaffold_1464 175_008_scaffold_1464
Species: Eggerthella lenta (57.14%)
7 5877 bp 66.90 5.95 87.39
NECEvent2014_5_8_scaffold_822 175_008_scaffold_822
Species: Eggerthella lenta (57.14%)
21 10116 bp 67.09 8.33 87.40
NECEvent2014_5_8_scaffold_3954 175_008_scaffold_3954
Species: Eggerthella lenta (50%)
4 1989 bp 65.66 5.58 87.48
NECEvent2014_5_8_scaffold_720 175_008_scaffold_720
Genus: Eggerthella (66.67%)
12 11539 bp 63.02 6.27 87.49
NECEvent2014_5_8_scaffold_733 175_008_scaffold_733
Genus: Eggerthella (66.67%)
9 11321 bp 63.81 6.40 87.50
NECEvent2014_5_8_scaffold_4489 175_008_scaffold_4489
Species: Eggerthella lenta (66.67%)
3 1703 bp 67.12 4.32 87.55
NECEvent2014_5_8_scaffold_1775 175_008_scaffold_1775
Species: Eggerthella lenta (50%)
6 4797 bp 61.16 5.94 87.62
NECEvent2014_5_8_scaffold_2235 175_008_scaffold_2235
Species: Eggerthella lenta (50%)
4 3814 bp 65.42 5.23 87.62
NECEvent2014_5_8_scaffold_5441 175_008_scaffold_5441
Species: Eggerthella lenta (100%)
1 1328 bp 52.18 6.10 87.65
NECEvent2014_5_8_scaffold_2340 175_008_scaffold_2340
Species: Eggerthella lenta (100%)
3 3638 bp 65.89 6.64 87.66
NECEvent2014_5_8_scaffold_4348 175_008_scaffold_4348
Species: Eggerthella sp. HGA1 (100%)
3 1769 bp 65.63 4.92 87.68
NECEvent2014_5_8_scaffold_2896 175_008_scaffold_2896
Species: Eggerthella sp. HGA1 (66.67%)
3 2881 bp 63.94 7.13 87.68
NECEvent2014_5_8_scaffold_1360 175_008_scaffold_1360
Species: Eggerthella lenta (60%)
5 6304 bp 63.40 6.69 87.71
NECEvent2014_5_8_scaffold_1273 175_008_scaffold_1273
Phylum: Actinobacteria (57.14%)
7 6605 bp 66.89 6.29 87.71
NECEvent2014_5_8_scaffold_4044 175_008_scaffold_4044
Species: Eggerthella lenta (66.67%)
3 1936 bp 67.87 6.51 87.71
NECEvent2014_5_8_scaffold_2091 175_008_scaffold_2091
Species: Eggerthella lenta (50%)
4 4090 bp 66.16 6.05 87.73
NECEvent2014_5_8_scaffold_5104 175_008_scaffold_5104
Species: Eggerthella sp. HGA1 (100%)
2 1453 bp 67.86 6.19 87.75
NECEvent2014_5_8_scaffold_1548 175_008_scaffold_1548
Species: Eggerthella sp. HGA1 (50%)
6 5494 bp 50.78 8.38 87.75
NECEvent2014_5_8_scaffold_942 175_008_scaffold_942
Species: Eggerthella sp. HGA1 (50%)
8 8829 bp 64.87 6.93 87.77
NECEvent2014_5_8_scaffold_6257 175_008_scaffold_6257
Species: Eggerthella sp. HGA1 (100%)
2 1097 bp 67.73 5.33 87.78
NECEvent2014_5_8_scaffold_4763 175_008_scaffold_4763
Species: Peptoclostridium difficile (50%)
2 1592 bp 67.15 5.75 87.81
NECEvent2014_5_8_scaffold_5942 175_008_scaffold_5942
Species: Eggerthella sp. HGA1 (100%)
2 1178 bp 62.39 4.71 87.86
NECEvent2014_5_8_scaffold_5733 175_008_scaffold_5733
Species: Peptoclostridium difficile (100%)
1 1236 bp 65.05 8.01 87.86
NECEvent2014_5_8_scaffold_2592 175_008_scaffold_2592
Species: Eggerthella sp. HGA1 (50%)
4 3205 bp 61.72 5.85 87.89
NECEvent2014_5_8_scaffold_4829 175_008_scaffold_4829
Species: Eggerthella sp. HGA1 (100%)
2 1563 bp 62.32 5.76 87.91
NECEvent2014_5_8_scaffold_1822 175_008_scaffold_1822
Species: Eggerthella sp. HGA1 (66.67%)
3 4657 bp 67.94 6.89 87.93
NECEvent2014_5_8_scaffold_2310 175_008_scaffold_2310
Species: Eggerthella lenta (66.67%)
3 3684 bp 61.59 5.82 87.95
NECEvent2014_5_8_scaffold_2616 175_008_scaffold_2616
Species: Eggerthella sp. HGA1 (50%)
4 3171 bp 65.63 5.06 87.98
NECEvent2014_5_8_scaffold_4059 175_008_scaffold_4059
Species: Bifidobacterium breve (100%)
3 1923 bp 59.96 6.08 87.99
NECEvent2014_5_8_scaffold_6210 175_008_scaffold_6210
Species: Eggerthella sp. HGA1 (50%)
2 1108 bp 65.43 4.20 88.00
NECEvent2014_5_8_scaffold_5382 175_008_scaffold_5382
Species: Eggerthella lenta (100%)
2 1350 bp 62.81 5.11 88.00
NECEvent2014_5_8_scaffold_4861 175_008_scaffold_4861
Species: Eggerthella sp. HGA1 (100%)
2 1551 bp 61.64 4.45 88.01
NECEvent2014_5_8_scaffold_3812 175_008_scaffold_3812
Species: Peptoclostridium difficile (100%)
2 2079 bp 65.37 7.07 88.02
NECEvent2014_5_8_scaffold_2782 175_008_scaffold_2782
Species: Eggerthella sp. HGA1 (50%)
4 2998 bp 64.48 6.30 88.06
Displaying items 401-450 of 1015 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.