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NECEvent2014_5_8_Clostridium_sporogenes-rel_28_12

NECEvent2014_5_8_Clostridium_botulinum_28_13
In projects: NECEvent2014_5_8

Consensus taxonomy: Clostridium botulinum  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Refined by TS ESOM

Displaying items 151-200 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
NECEvent2014_5_8_scaffold_634
175_008_scaffold_634
Genus: Clostridium (93.33%)
15 13162 bp 27.47 11.28 89.62
NECEvent2014_5_8_scaffold_1727
175_008_scaffold_1727
Species: Clostridium botulinum (50%)
2 4914 bp 29.53 14.62 89.62
NECEvent2014_5_8_scaffold_405
175_008_scaffold_405
Species: Clostridium butyricum (61.9%)
21 19105 bp 28.96 23.92 89.60
NECEvent2014_5_8_scaffold_1672
175_008_scaffold_1672
Species: Clostridium sporogenes (80%)
5 5080 bp 25.14 9.80 89.59
NECEvent2014_5_8_scaffold_424
175_008_scaffold_424
Species: Clostridium sporogenes (50%)
18 18599 bp 29.54 12.11 89.59
NECEvent2014_5_8_scaffold_897
175_008_scaffold_897
Species: Clostridium sporogenes (50%)
8 9280 bp 27.50 10.89 89.58
NECEvent2014_5_8_scaffold_1197
175_008_scaffold_1197
Species: Clostridium botulinum (63.64%)
11 7100 bp 26.76 11.96 89.58
NECEvent2014_5_8_scaffold_367
175_008_scaffold_367
Species: Clostridium sporogenes (57.14%)
14 21036 bp 30.40 12.32 89.52
NECEvent2014_5_8_scaffold_2117
175_008_scaffold_2117
Species: Clostridium botulinum (100%)
4 4042 bp 27.86 11.65 89.51
NECEvent2014_5_8_scaffold_1268
175_008_scaffold_1268
Species: Clostridium sporogenes (57.14%)
7 6643 bp 30.72 13.57 89.51
NECEvent2014_5_8_scaffold_1081
175_008_scaffold_1081
Species: Clostridium botulinum (50%)
8 7813 bp 29.28 10.37 89.50
NECEvent2014_5_8_scaffold_1019
175_008_scaffold_1019
13 8236 bp 29.33 12.71 89.49
NECEvent2014_5_8_scaffold_6153
175_008_scaffold_6153
Species: Clostridium sporogenes (100%)
1 1120 bp 29.73 8.57 89.46
NECEvent2014_5_8_scaffold_728
175_008_scaffold_728
Species: Clostridium botulinum (50%)
6 11415 bp 30.42 13.80 89.44
NECEvent2014_5_8_scaffold_1613
175_008_scaffold_1613
Species: Clostridium botulinum (66.67%)
6 5248 bp 27.19 10.86 89.41
NECEvent2014_5_8_scaffold_734
175_008_scaffold_734
Species: Clostridium sporogenes (71.43%)
14 11319 bp 28.66 12.75 89.32
NECEvent2014_5_8_scaffold_552
175_008_scaffold_552
Species: Clostridium botulinum (61.11%)
18 14866 bp 26.16 11.31 89.32
NECEvent2014_5_8_scaffold_1340
175_008_scaffold_1340
Species: Clostridium sporogenes (85.71%)
7 6372 bp 28.58 13.96 89.31
NECEvent2014_5_8_scaffold_1741
175_008_scaffold_1741
Species: Clostridium botulinum (50%)
2 4874 bp 27.78 12.06 89.19
NECEvent2014_5_8_scaffold_4560
175_008_scaffold_4560
Species: Clostridium sporogenes (100%)
2 1672 bp 26.44 11.66 89.17
NECEvent2014_5_8_scaffold_738
175_008_scaffold_738
Species: Clostridium butyricum (50%)
12 12045 bp 28.53 26.71 89.17
NECEvent2014_5_8_scaffold_3656
175_008_scaffold_3656
Order: Clostridiales (66.67%)
3 2178 bp 30.12 7.85 89.12
NECEvent2014_5_8_scaffold_1840
175_008_scaffold_1840
Species: Clostridium sporogenes (100%)
4 4602 bp 27.94 10.92 89.11
NECEvent2014_5_8_scaffold_2210
175_008_scaffold_2210
Species: Clostridium botulinum (100%)
1 3856 bp 30.24 11.48 89.08
NECEvent2014_5_8_scaffold_2225
175_008_scaffold_2225
Species: Clostridium sporogenes (50%)
4 3830 bp 27.00 7.87 89.06
NECEvent2014_5_8_scaffold_1266
175_008_scaffold_1266
Species: Clostridium botulinum (57.14%)
7 6671 bp 28.42 12.10 89.04
NECEvent2014_5_8_scaffold_770
175_008_scaffold_770
Species: Clostridium botulinum (100%)
10 10857 bp 32.23 15.83 89.03
NECEvent2014_5_8_scaffold_700
175_008_scaffold_700
Species: Clostridium sporogenes (100%)
7 11853 bp 28.08 11.33 89.02
NECEvent2014_5_8_scaffold_2003
175_008_scaffold_2003
Species: Clostridium botulinum (66.67%)
3 4251 bp 28.98 12.28 88.99
NECEvent2014_5_8_scaffold_2670
175_008_scaffold_2670
Species: Clostridium sporogenes (75%)
4 3119 bp 26.93 10.68 88.97
NECEvent2014_5_8_scaffold_2158
175_008_scaffold_2158
Species: Clostridium sporogenes (75%)
4 3960 bp 25.71 7.80 88.94
NECEvent2014_5_8_scaffold_2520
175_008_scaffold_2520
Species: Clostridium sporogenes (75%)
4 3313 bp 24.09 10.41 88.92
NECEvent2014_5_8_scaffold_2960
175_008_scaffold_2960
Species: Clostridium sporogenes (100%)
3 2794 bp 25.55 8.38 88.90
NECEvent2014_5_8_scaffold_593
175_008_scaffold_593
Species: Clostridium sporogenes (58.82%)
17 13920 bp 28.29 12.63 88.88
NECEvent2014_5_8_scaffold_346
175_008_scaffold_346
Genus: Clostridium (96%)
25 21958 bp 28.57 10.94 88.87
NECEvent2014_5_8_scaffold_468
175_008_scaffold_468
Species: Clostridium sporogenes (57.14%)
14 17153 bp 28.34 12.63 88.86
NECEvent2014_5_8_scaffold_1486
175_008_scaffold_1486
Species: Clostridium botulinum (60%)
5 5771 bp 28.21 12.01 88.84
NECEvent2014_5_8_scaffold_5798
175_008_scaffold_5798
Species: Clostridium sporogenes (100%)
1 1220 bp 25.00 7.87 88.77
NECEvent2014_5_8_scaffold_985
175_008_scaffold_985
Species: Clostridium sporogenes (62.5%)
8 8477 bp 27.79 15.02 88.76
NECEvent2014_5_8_scaffold_344
175_008_scaffold_344
Species: Clostridium botulinum (57.69%)
26 22188 bp 28.22 12.55 88.64
NECEvent2014_5_8_scaffold_2413
175_008_scaffold_2413
Species: Clostridium botulinum (50%)
2 3513 bp 30.12 14.77 88.64
NECEvent2014_5_8_scaffold_827
175_008_scaffold_827
Species: Clostridium botulinum (80%)
10 10066 bp 31.01 13.07 88.58
NECEvent2014_5_8_scaffold_1215
175_008_scaffold_1215
Species: Clostridium sporogenes (57.14%)
7 7050 bp 27.74 11.13 88.51
NECEvent2014_5_8_scaffold_849
175_008_scaffold_849
Species: Clostridium butyricum (55.56%)
9 9893 bp 26.51 21.26 88.34
NECEvent2014_5_8_scaffold_564
175_008_scaffold_564
Species: Clostridium botulinum (52.94%)
17 14588 bp 28.25 12.79 88.31
NECEvent2014_5_8_scaffold_1180
175_008_scaffold_1180
Species: Clostridium butyricum (50%)
8 7214 bp 29.05 30.30 88.30
NECEvent2014_5_8_scaffold_2354
175_008_scaffold_2354
Species: Clostridium sporogenes (66.67%)
3 3616 bp 28.48 13.69 88.27
NECEvent2014_5_8_scaffold_1945
175_008_scaffold_1945
Species: Clostridium botulinum (100%)
3 4368 bp 28.04 11.98 88.26
NECEvent2014_5_8_scaffold_1879
175_008_scaffold_1879
Species: Clostridium botulinum (100%)
3 4537 bp 28.94 11.04 88.21
NECEvent2014_5_8_scaffold_588
175_008_scaffold_588
Species: Clostridium botulinum (62.5%)
16 14000 bp 28.34 12.26 88.11
Displaying items 151-200 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.