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NECEvent2014_5_8_scaffold_137

Alias: 175_008_scaffold_137

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_8_scaffold_137_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(101..1309)
DNA (1209bp) protein (403aa)
UPF0348 protein HA1_10441 n=1 Tax=Clostridium perfringens F262 RepID=H7CXC1_CLOPF rbh
UPF0348 protein HA1_10441 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.
hypothetical protein
NECEvent2014_5_8_scaffold_137_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1544..2545
DNA (1002bp) protein (334aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:EDT23462.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EDT23462.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
Phosphate acetyltransferase n=9 Tax=Clostridium perfringens RepID=Q8XJN1_CLOPE rbh
eutD; phosphotransacetylase
NECEvent2014_5_8_scaffold_137_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2636..3832
DNA (1197bp) protein (399aa)
ackA; acetate kinase (EC:2.7.2.1)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia;
Acetate kinase n=4 Tax=Clostridium perfringens RepID=H7CXB9_CLOPF rbh
NECEvent2014_5_8_scaffold_137_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3946..4446
DNA (501bp) protein (167aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CXB8_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT23434.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC
hypothetical protein
NECEvent2014_5_8_scaffold_137_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4462..4644
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=11 Tax=Clostridium perfringens RepID=RL32_CLOP1
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000255|HAMAP-Rule:MF_00340}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (stra
NECEvent2014_5_8_scaffold_137_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4702..5721
DNA (1020bp) protein (340aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase
Phosphate acyltransferase n=6 Tax=Clostridium perfringens RepID=PLSX_CLOP1 rbh
plsX; glycerol-3-phosphate acyltransferase PlsX
NECEvent2014_5_8_scaffold_137_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5798..6028
DNA (231bp) protein (77aa)
Acyl carrier protein n=11 Tax=Clostridium perfringens RepID=ACP_CLOP1
acpP; acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridial
NECEvent2014_5_8_scaffold_137_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6127..6840
DNA (714bp) protein (238aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=7 Tax=Clostridium perfringens RepID=RNC_CLOPE rbh
NECEvent2014_5_8_scaffold_137_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6819..7892
DNA (1074bp) protein (358aa)
Radical SAM domain protein n=2 Tax=Clostridium perfringens RepID=Q0TPN6_CLOP1 rbh
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:EDT23447.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. A
NECEvent2014_5_8_scaffold_137_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8097..11654
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TPN7_CLOP1 rbh
smc; chromosome segregation protein SMC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringen
NECEvent2014_5_8_scaffold_137_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11668..12582
DNA (915bp) protein (305aa)
Signal recognition particle receptor FtsY n=5 Tax=Clostridium perfringens RepID=Q0TPN8_CLOP1 rbh
ftsY; signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiale
NECEvent2014_5_8_scaffold_137_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12757..13095
DNA (339bp) protein (113aa)
UPF0122 protein CPF_1968 n=3 Tax=Clostridium perfringens RepID=Y1968_CLOP1
DNA-binding protein
UPF0122 protein AC1_2139 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str.
NECEvent2014_5_8_scaffold_137_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13107..14465
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=8 Tax=Clostridium perfringens RepID=H7CXA9_CLOPF rbh
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clos
NECEvent2014_5_8_scaffold_137_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14499..14744
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=11 Tax=Clostridium perfringens RepID=RS16_CLOP1
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.
NECEvent2014_5_8_scaffold_137_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14788..15015
DNA (228bp) protein (76aa)
UPF0109 protein CPE1711 n=7 Tax=Clostridium perfringens RepID=Y1711_CLOPE
hypothetical protein
UPF0109 protein CPR_1683 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strai
NECEvent2014_5_8_scaffold_137_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15071..15568
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=8 Tax=Clostridium perfringens RepID=RIMM_CLOP1 rbh
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
NECEvent2014_5_8_scaffold_137_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15558..16268
DNA (711bp) protein (237aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000255|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltr
tRNA (guanine-N(1)-)-methyltransferase n=4 Tax=Clostridium perfringens RepID=TRMD_CLOP1 rbh
NECEvent2014_5_8_scaffold_137_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16389..16736
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=8 Tax=Clostridium perfringens RepID=RL19_CLOP1
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (stra
NECEvent2014_5_8_scaffold_137_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16883..17728
DNA (846bp) protein (282aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridium perfringens RepID=Q0TPP6_CLOP1 rbh
rbgA; ribosomal biogenesis GTPase
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B st
NECEvent2014_5_8_scaffold_137_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17744..18562
DNA (819bp) protein (273aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=195103 species="Bacteria; Firmicutes; Clos
Ribonuclease HII n=2 Tax=Clostridium perfringens RepID=RNH2_CLOP1 rbh
NECEvent2014_5_8_scaffold_137_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18563..18931)
DNA (369bp) protein (123aa)
UPF0102 protein HMPREF9476_01363 n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CS42_CLOPF
hypothetical protein
UPF0102 protein CPE1705 {ECO:0000255|HAMAP-Rule:MF_00048}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain
NECEvent2014_5_8_scaffold_137_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19061..20584
DNA (1524bp) protein (508aa)
Mg chelatase homolog n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V452_CLOPF rbh
Mg chelatase-like protein
Mg chelatase homolog {ECO:0000313|EMBL:EDT71357.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721
NECEvent2014_5_8_scaffold_137_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20585..21670
DNA (1086bp) protein (362aa)
DNA protecting protein DprA n=2 Tax=Clostridium perfringens RepID=Q0TPQ0_CLOP1 rbh
dprA; DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:EDT71405.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str.
NECEvent2014_5_8_scaffold_137_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21664..23814
DNA (2151bp) protein (717aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=451754 species="Bacteria; Firmicutes
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=3 Tax=Clostridium perfringens RepID=Q0TPQ1_CLOP1 rbh
NECEvent2014_5_8_scaffold_137_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23956..24732
DNA (777bp) protein (259aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=11 Tax=Clostridium perfringens RepID=CODY_CLOP1 rbh
codY; transcriptional repressor CodY
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
NECEvent2014_5_8_scaffold_137_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25115..25816
DNA (702bp) protein (234aa)
30S ribosomal protein S2 n=8 Tax=Clostridium perfringens RepID=RS2_CLOP1 rbh
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strai
NECEvent2014_5_8_scaffold_137_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25896..26807
DNA (912bp) protein (304aa)
Elongation factor Ts n=7 Tax=Clostridium perfringens RepID=EFTS_CLOP1 rbh
tsf; elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridi
NECEvent2014_5_8_scaffold_137_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26900..27613
DNA (714bp) protein (238aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
Uridylate kinase n=10 Tax=Clostridium perfringens RepID=PYRH_CLOP1 rbh
NECEvent2014_5_8_scaffold_137_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27627..28184
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=11 Tax=Clostridium perfringens RepID=RRF_CLOP1 rbh
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=488537 species="Bacteria;
NECEvent2014_5_8_scaffold_137_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28249..29010
DNA (762bp) protein (254aa)
uppS; undecaprenyl pyrophosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
Isoprenyl transferase n=11 Tax=Clostridium perfringens RepID=ISPT_CLOPE rbh
Displaying items 1-30 of 43 in total

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