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NECEvent2014_6_3_scaffold_258

Alias: 176_003_scaffold_258

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_3_scaffold_258_1
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

181..1656
DNA (1476bp) protein (492aa)
Uncharacterized protein {ECO:0000313|EMBL:KEZ85049.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
peptidase S41
NECEvent2014_6_3_scaffold_258_2
unknown

Not on your lists

comp(1853..2026)
DNA (174bp) protein (58aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_3
Peptostreptococcaceae bacterium AS15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2239..2454)
DNA (216bp) protein (72aa)
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EJP25350.1}; TaxID=936556 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacter
DNA-binding protein
NECEvent2014_6_3_scaffold_258_4
Peptoniphilus sp. BV3AC2, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2444..2785)
DNA (342bp) protein (114aa)
Uncharacterized protein; TaxID=1111133 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis; Peptoniphilus.;" source="Peptoniphilus sp. BV3AC2.;"
NECEvent2014_6_3_scaffold_258_5
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2942..3973)
DNA (1032bp) protein (344aa)
transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AGX44392.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharo
NECEvent2014_6_3_scaffold_258_6
unknown

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comp(4098..4223)
DNA (126bp) protein (42aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4488..4850)
DNA (363bp) protein (121aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEH99717.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_6_3_scaffold_258_8
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4898..5530)
DNA (633bp) protein (211aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EKY27886.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DS
ABC transporter ATP-binding protein
NECEvent2014_6_3_scaffold_258_9
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5542..6900)
DNA (1359bp) protein (453aa)
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EKY27885.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatu
ABC transporter permease
NECEvent2014_6_3_scaffold_258_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7109..8551)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
hypothetical protein
NECEvent2014_6_3_scaffold_258_11
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8539..9216)
DNA (678bp) protein (226aa)
Response regulator receiver domain protein {ECO:0000313|EMBL:EKY27883.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cela
transcriptional regulator
NECEvent2014_6_3_scaffold_258_12
unknown

Not on your lists

comp(9875..10384)
DNA (510bp) protein (170aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_13
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10718..11152)
DNA (435bp) protein (145aa)
Uncharacterized protein {ECO:0000313|EMBL:ERK30818.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
NECEvent2014_6_3_scaffold_258_14
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

11449..11766
DNA (318bp) protein (106aa)
N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIB component {ECO:0000313|EMBL:CRH80348.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CRH80348.1};; TaxID=813 species="Bacteria; Chlamydiae; Chlamydia
PTS system cellobiose-specific transporter subunit IIB (EC:2.7.1.69)
NECEvent2014_6_3_scaffold_258_15
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11835..12761
DNA (927bp) protein (309aa)
Putative uncharacterized protein {ECO:0000313|EMBL:EEU16127.1}; TaxID=565642 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATC
PEP phosphonomutase family protein
NECEvent2014_6_3_scaffold_258_16
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12778..14088
DNA (1311bp) protein (437aa)
PTS system, cellobiose-specific IIC component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=565642 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATCC 4200.;
NECEvent2014_6_3_scaffold_258_17
Enterococcus durans, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14182..14901
DNA (720bp) protein (240aa)
GntR family transcriptional regulator {ECO:0000313|EMBL:EMS76754.1}; TaxID=1288492 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus durans
GntR family transcriptional regulator
NECEvent2014_6_3_scaffold_258_18
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15126..15446)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:EJZ50462.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
NECEvent2014_6_3_scaffold_258_19
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(15605..16015)
DNA (411bp) protein (137aa)
Uncharacterized protein {ECO:0000313|EMBL:CCX46182.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
NECEvent2014_6_3_scaffold_258_20
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16202..17380)
DNA (1179bp) protein (393aa)
Uncharacterized protein {ECO:0000313|EMBL:KEZ85307.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
NECEvent2014_6_3_scaffold_258_21
unknown

Not on your lists

comp(17813..18391)
DNA (579bp) protein (193aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_22
unknown

Not on your lists

comp(18442..18585)
DNA (144bp) protein (48aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_23
unknown

Not on your lists

comp(18691..18789)
DNA (99bp) protein (33aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_258_24
Clostridium paraputrificum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19410..19985)
DNA (576bp) protein (192aa)
Chitinase B {ECO:0000313|EMBL:BAA23796.1}; EC=3.2.1.14 {ECO:0000313|EMBL:BAA23796.1};; TaxID=29363 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clos
chitinase B
Displaying 24 items

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