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NECEvent2014_6_3_scaffold_287

Alias: 176_003_scaffold_287

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_3_scaffold_287_1
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)
Uncharacterized protein {ECO:0000313|EMBL:ENZ03624.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
NECEvent2014_6_3_scaffold_287_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(363..743)
DNA (381bp) protein (127aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
endoribonuclease endoA (EC:3.1.-.-)
NECEvent2014_6_3_scaffold_287_3
unknown

Not on your lists

comp(725..955)
DNA (231bp) protein (77aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_287_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1078..1707)
DNA (630bp) protein (210aa)
Uncharacterized protein {ECO:0000313|EMBL:EEH99516.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_6_3_scaffold_287_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1766..3268)
DNA (1503bp) protein (501aa)
yjeF-related family protein
YjeF-related family protein {ECO:0000313|EMBL:AIY83556.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sulli
NECEvent2014_6_3_scaffold_287_6
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3272..3649)
DNA (378bp) protein (126aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
acpS; 4'-phosphopantetheinyl transferase
NECEvent2014_6_3_scaffold_287_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3680..4006)
DNA (327bp) protein (109aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84663.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.
NECEvent2014_6_3_scaffold_287_8
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4397..4807)
DNA (411bp) protein (137aa)
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262780 species="Bacteria; Firmicutes; Clostri
ssb; single-stranded DNA-binding family protein
NECEvent2014_6_3_scaffold_287_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4951..5787)
DNA (837bp) protein (279aa)
Ribonuclease BN {ECO:0000313|EMBL:KJU72316.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
yihY; YihY family inner membrane domain protein
NECEvent2014_6_3_scaffold_287_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6053..6925
DNA (873bp) protein (291aa)
Galactose mutarotase {ECO:0000313|EMBL:KJU72317.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
aldose 1-epimerase family protein
NECEvent2014_6_3_scaffold_287_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6941..9235)
DNA (2295bp) protein (765aa)
ATP-dependent helicase {ECO:0000313|EMBL:KJU72318.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
DEAD_2 family protein
NECEvent2014_6_3_scaffold_287_12
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9433..10023)
DNA (591bp) protein (197aa)
Uncharacterized protein {ECO:0000313|EMBL:CDG00693.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
NECEvent2014_6_3_scaffold_287_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10511..10756
DNA (246bp) protein (82aa)
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EHJ02318.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-V
abrB; AbrB family transcriptional regulator
NECEvent2014_6_3_scaffold_287_14
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10870..11715)
DNA (846bp) protein (282aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule
S-adenosylmethionine-dependent methyltransferase, YraL family
NECEvent2014_6_3_scaffold_287_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11715..12470)
DNA (756bp) protein (252aa)
Uncharacterized protein {ECO:0000313|EMBL:KHD15459.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
small; methyltransferase Small
NECEvent2014_6_3_scaffold_287_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12806..14038)
DNA (1233bp) protein (411aa)
Putative SagA protein {ECO:0000313|EMBL:CDG00697.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
SagA protein
NECEvent2014_6_3_scaffold_287_trna_1
unknown

Not on your lists

14295..14367
DNA (73bp)
transferRNA
NECEvent2014_6_3_scaffold_287_17
unknown

Not on your lists

comp(14408..14512)
DNA (105bp) protein (35aa)

This feature has no annotations

NECEvent2014_6_3_scaffold_287_18
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14832..15476
DNA (645bp) protein (215aa)
Putative HAD-superfamily hydrolase, subfamily IA,variant 3 {ECO:0000313|EMBL:CDG00701.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
NECEvent2014_6_3_scaffold_287_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15509..16255)
DNA (747bp) protein (249aa)
prsA2; foldase protein PrsA (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
NECEvent2014_6_3_scaffold_287_20
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16409..16861
DNA (453bp) protein (151aa)
putative peroxiredoxin bcp (EC:1.11.1.15)
Peroxiredoxin bcp {ECO:0000313|EMBL:EOR25169.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
NECEvent2014_6_3_scaffold_287_trna_2
unknown

Not on your lists

comp(16902..16974)
DNA (73bp)
transferRNA
Displaying 22 items

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